Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 5.7e-115 417.9 264 100.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.7e-64 249.6 191 89.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 8.9e-60 234.6 191 82.2
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 7.8e-56 221.5 190 84.2
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 8.6e-55 218.0 190 81.6
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-53 214.2 191 75.9
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.2e-50 203.4 191 78.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.9e-50 203.0 192 72.4
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.9e-49 200.3 193 62.7
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 3.2e-49 199.5 192 62.0
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.1e-49 199.1 193 63.7
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.1e-49 198.4 189 68.8
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.2e-48 197.6 195 76.4
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.1e-48 196.8 195 71.8
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.1e-48 196.8 192 61.5
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 3.5e-48 196.1 189 79.4
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 4.6e-48 195.7 190 65.3
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.0e-48 195.3 195 71.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 7.8e-48 194.9 189 65.6
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.3e-47 194.1 194 67.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-47 194.1 195 70.8
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.7e-47 193.7 195 70.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 3.0e-47 193.0 193 69.9
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 3.9e-47 192.6 191 67.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 5.1e-47 192.2 189 59.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 6.6e-47 191.8 189 73.5
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 6.6e-47 191.8 189 74.1
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 8.6e-47 191.4 190 70.0
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.1e-46 191.0 189 72.0
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.5e-46 189.9 190 63.2
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 9.6e-46 188.0 190 69.5
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 9.6e-46 188.0 190 76.3
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 9.6e-46 188.0 195 76.9
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 9.6e-46 188.0 190 64.7
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.2e-45 187.6 196 65.3
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.2e-45 187.6 191 60.7
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-45 187.6 197 66.5
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.6e-45 187.2 196 73.5
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.6e-45 187.2 189 68.8
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.1e-45 186.8 196 64.8
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.1e-45 186.8 190 66.8
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 2.1e-45 186.8 195 75.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.1e-45 186.8 193 71.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.1e-45 186.8 196 68.9
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.8e-45 186.4 190 71.6
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.8e-45 186.4 190 73.2
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 3.6e-45 186.0 195 76.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.6e-45 186.0 189 66.7
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.7e-45 185.7 189 69.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 4.7e-45 185.7 191 59.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 6.2e-45 185.3 190 69.5
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 6.2e-45 185.3 192 68.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 8.1e-45 184.9 190 68.9
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 8.1e-45 184.9 192 69.3
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.1e-44 184.5 189 61.9
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.4e-44 184.1 193 71.5
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.8e-44 183.7 188 69.7
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 2.4e-44 183.3 190 72.6
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 4.0e-44 182.6 190 72.6
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 4.0e-44 182.6 201 65.2
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 4.0e-44 182.6 191 70.7
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.2e-44 182.2 191 67.0
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.8e-44 181.8 195 77.9
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.2e-43 181.0 191 64.9
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.2e-43 181.0 192 67.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-43 181.0 191 67.5
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.5e-43 180.6 190 58.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 2.0e-43 180.3 192 60.4
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 2.6e-43 179.9 191 64.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 2.6e-43 179.9 191 67.5
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.6e-43 179.9 195 73.3
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.6e-43 179.9 192 72.9
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 3.4e-43 179.5 190 65.8
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 4.4e-43 179.1 198 69.7
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 5.8e-43 178.7 191 69.1
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 5.8e-43 178.7 191 61.3
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 9.9e-43 177.9 151 66.9
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 2.9e-42 176.4 189 68.8
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 4.9e-42 175.6 190 69.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 6.4e-42 175.3 189 71.4
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 6.4e-42 175.3 189 65.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-41 174.1 189 66.7
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.4e-41 174.1 189 66.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-41 174.1 136 80.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-41 174.1 191 64.9
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.9e-41 173.7 152 63.8
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.4e-41 173.3 191 67.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.4e-41 173.3 189 64.0
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.2e-41 172.9 155 72.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 3.2e-41 172.9 192 73.4
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 4.2e-41 172.6 191 66.5
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 4.2e-41 172.6 152 63.8
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 5.4e-41 172.2 191 63.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 5.4e-41 172.2 193 62.2
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 7.1e-41 171.8 155 64.5
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 9.3e-41 171.4 190 68.4
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.6e-40 170.6 191 70.7
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.1e-40 170.2 141 76.6
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.7e-40 169.9 190 73.2
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.5e-40 169.5 192 62.0
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 3.5e-40 169.5 151 75.5
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 4.6e-40 169.1 189 65.1
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 4.6e-40 169.1 224 62.5
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 6.0e-40 168.7 189 63.0
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 6.0e-40 168.7 150 74.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 6.0e-40 168.7 151 70.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 7.8e-40 168.3 187 72.7
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.0e-39 167.9 179 64.2
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 3.9e-39 166.0 190 69.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 3.9e-39 166.0 192 66.7
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 3.9e-39 166.0 193 57.0
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 8.7e-39 164.9 194 66.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.9e-38 163.7 148 68.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 4.0e-36 156.0 174 56.9
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 6.9e-36 155.2 85 89.4
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.5e-35 154.1 140 70.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 9.9e-35 151.4 178 62.4
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.2e-34 150.2 155 71.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.9e-34 149.1 88 83.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 6.4e-34 148.7 148 61.5
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.1e-33 147.9 159 64.2
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.4e-33 147.5 87 83.9
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.4e-33 147.5 172 72.1
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 2.4e-33 146.7 201 53.7
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 2.4e-28 130.2 75 85.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 5.3e-28 129.0 70 87.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 3.4e-27 126.3 69 84.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 4.2e-25 119.4 153 66.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 7.1e-25 118.6 145 65.5
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.8e-23 114.0 208 59.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.7e-21 106.3 110 55.5
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.7e-21 106.3 81 64.2
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 3.1e-20 103.2 189 48.1
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 6.9e-20 102.1 171 67.8
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.2e-19 101.3 64 76.6
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.0e-19 100.5 69 75.4
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 3.8e-18 96.3 177 59.3
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 4.9e-18 95.9 79 60.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.1e-16 90.5 81 55.6
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.1e-16 90.5 151 58.3
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 6.0e-16 89.0 79 53.2
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.7e-14 82.4 47 83.0
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 2.5e-09 67.0 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 5.1e-07 59.3 39 61.5


User provided reference genes

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