Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 7.3e-276 953.4 516 100.0
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.7e-193 679.1 543 74.2
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 9.4e-114 414.8 550 50.9
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 6.4e-54 216.1 524 36.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 6.6e-51 206.1 525 36.4
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.4e-48 198.4 536 34.9
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 5.3e-48 196.4 526 34.2
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 5.8e-47 193.0 557 34.6
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 9.3e-45 185.7 573 33.2
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.2e-44 185.3 311 42.1
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 2.1e-44 184.5 540 33.7
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 4.6e-44 183.3 279 41.2
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.3e-43 181.8 517 32.9
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 3.9e-43 180.3 523 33.7
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 3.9e-43 180.3 222 50.0
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.1e-42 178.7 222 49.1
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.4e-40 171.0 147 59.2
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.3e-40 169.9 312 39.4
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.9e-40 169.5 312 38.5
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 9.0e-40 169.1 572 32.3
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.5e-39 168.3 521 32.2
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 9.9e-39 165.6 212 46.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.9e-38 164.1 356 34.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 3.8e-38 163.7 177 50.8
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 4.9e-38 163.3 545 30.6
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 6.4e-38 162.9 147 55.8
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.1e-37 162.2 143 57.3
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-37 162.2 312 38.5
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.1e-37 162.2 224 45.1
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.4e-37 161.8 147 53.1
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.9e-37 161.4 249 42.6
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.2e-37 160.6 142 57.7
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 5.4e-37 159.8 299 37.1
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 5.4e-37 159.8 246 41.1
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 7.1e-37 159.5 145 55.9
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 9.3e-37 159.1 176 48.3
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 9.3e-37 159.1 488 32.0
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.2e-36 158.7 486 33.3
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.2e-36 158.7 145 53.1
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.2e-36 158.7 146 54.8
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.2e-36 158.7 168 52.4
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.6e-36 158.3 146 54.8
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.6e-36 158.3 335 38.5
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 2.1e-36 157.9 231 44.2
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 2.7e-36 157.5 139 56.8
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.5e-36 157.1 146 53.4
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 4.6e-36 156.8 275 41.5
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.0e-35 155.6 176 46.6
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.3e-35 154.5 219 47.5
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 3.9e-35 153.7 180 47.8
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.5e-34 151.8 155 53.5
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.9e-34 151.4 154 51.9
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.5e-34 151.0 188 46.8
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 4.3e-34 150.2 492 31.9
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 7.4e-34 149.4 545 30.1
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 7.4e-34 149.4 262 38.2
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 9.6e-34 149.1 229 42.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.6e-33 148.3 240 38.8
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.8e-33 146.7 145 53.1
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 6.2e-33 146.4 144 53.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 8.1e-33 146.0 561 31.2
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.8e-32 144.8 248 39.9
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.8e-32 144.8 175 47.4
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.4e-32 144.4 308 37.0
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 3.1e-32 144.1 270 39.6
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 4.0e-32 143.7 497 30.6
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 5.3e-32 143.3 380 32.4
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 5.3e-32 143.3 140 52.9
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.3e-32 143.3 315 35.9
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 5.3e-32 143.3 262 37.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 6.9e-32 142.9 132 53.8
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 6.9e-32 142.9 279 38.7
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.0e-32 142.5 315 35.9
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.2e-31 142.1 509 29.1
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.5e-31 141.7 194 44.3
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.6e-31 141.0 135 54.1
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.6e-31 141.0 270 38.9
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.6e-31 141.0 144 50.7
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 3.4e-31 140.6 174 46.0
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.4e-31 140.6 177 42.9
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 4.5e-31 140.2 494 29.6
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 4.5e-31 140.2 500 29.8
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.8e-31 139.8 255 40.4
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 7.6e-31 139.4 153 47.7
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.0e-30 139.0 133 54.1
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.0e-30 139.0 141 52.5
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.0e-30 139.0 379 36.1
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.3e-30 138.7 250 38.8
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 4.9e-30 136.7 543 29.5
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.5e-30 136.3 309 35.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 8.4e-30 136.0 143 50.3
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.1e-29 135.6 256 40.2
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.5e-29 134.4 516 29.8
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 4.2e-29 133.7 147 50.3
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 7.1e-29 132.9 297 33.7
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 7.1e-29 132.9 241 36.5
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.6e-28 131.7 627 29.2
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 1.6e-28 131.7 225 38.2
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.9e-27 127.1 492 30.7
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.9e-26 124.8 148 40.5
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 2.5e-26 124.4 157 43.9
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.3e-25 122.1 146 45.2
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.7e-25 120.6 228 36.4
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 8.2e-25 119.4 220 38.6
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 3.1e-24 117.5 218 33.5
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 5.3e-24 116.7 180 43.3
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 7.6e-23 112.8 237 34.6
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.3e-22 112.1 264 35.2
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 5.0e-22 110.2 147 36.7
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 6.5e-22 109.8 336 29.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 9.3e-21 105.9 163 42.3
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.2e-20 105.5 248 35.5
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 4.6e-20 103.6 96 54.2
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 4.6e-20 103.6 398 28.6
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.3e-19 102.1 130 38.5
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.8e-19 101.7 204 35.3
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.5e-18 98.6 236 33.1
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.9e-18 98.2 151 37.1
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.3e-18 97.4 130 36.9
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.3e-18 97.4 130 36.9
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 2.8e-17 94.4 107 49.5
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 6.3e-17 93.2 403 33.0
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.4e-16 92.0 219 32.9
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.2e-15 89.0 281 30.2
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 8.5e-14 82.8 94 50.0
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.2e-12 79.0 206 31.6
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.2e-12 79.0 112 44.6
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 6.7e-11 73.2 67 56.7
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.2e-09 68.2 105 43.8
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 2.8e-09 67.8 97 37.1
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 8.2e-09 66.2 112 35.7
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.9e-06 57.8 80 38.8
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 6.5e-06 56.6 91 35.2


User provided reference genes

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