Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 1.4e-172 609.4 286 100.0
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 3.2e-31 139.8 101 66.3
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 3.6e-30 136.3 104 62.5
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.0e-29 134.8 88 71.6
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.4e-29 134.4 62 93.5
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.3e-29 133.7 77 76.6
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 3.0e-29 133.3 70 82.9
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.0e-29 133.3 70 84.3
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 5.2e-29 132.5 65 90.8
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.0e-28 130.6 83 68.7
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.6e-28 130.2 65 87.7
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 4.4e-28 129.4 60 88.3
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 7.5e-28 128.6 63 85.7
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 7.5e-28 128.6 60 91.7
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 9.7e-28 128.3 80 71.2
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 9.7e-28 128.3 80 71.2
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.3e-27 127.9 60 88.3
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.3e-27 127.9 67 82.1
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.3e-27 127.9 68 79.4
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.7e-27 127.5 60 88.3
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.7e-27 127.5 60 90.0
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.7e-27 127.5 61 86.9
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 2.2e-27 127.1 60 86.7
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.2e-27 127.1 67 80.6
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.2e-27 127.1 60 86.7
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.2e-27 127.1 59 89.8
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 2.8e-27 126.7 61 88.5
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.8e-27 126.7 62 85.5
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.8e-27 126.7 60 86.7
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.8e-27 126.7 67 82.1
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.8e-27 125.9 60 88.3
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 4.8e-27 125.9 60 88.3
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.8e-27 125.9 67 80.6
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 8.2e-27 125.2 71 76.1
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-26 124.8 60 86.7
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.1e-26 124.8 60 86.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.1e-26 124.8 60 86.7
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 1.1e-26 124.8 75 73.3
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.4e-26 124.4 60 86.7
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.8e-26 124.0 60 85.0
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.8e-26 124.0 65 80.0
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-26 124.0 60 86.7
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 2.4e-26 123.6 60 85.0
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.4e-26 123.6 60 85.0
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 2.4e-26 123.6 64 81.2
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 2.4e-26 123.6 60 85.0
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 2.4e-26 123.6 60 85.0
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 3.1e-26 123.2 72 72.2
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 4.1e-26 122.9 60 85.0
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 4.1e-26 122.9 60 86.7
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 4.1e-26 122.9 60 86.7
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 5.3e-26 122.5 67 79.1
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.3e-26 122.5 67 80.6
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 5.3e-26 122.5 67 79.1
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 7.0e-26 122.1 60 83.3
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 9.1e-26 121.7 68 76.5
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 83.3
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 85.0
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 85.0
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 85.0
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 83.3
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 85.0
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 85.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 9.1e-26 121.7 60 85.0
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-25 121.3 60 80.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-25 121.3 60 80.0
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-25 121.3 60 85.0
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.2e-25 121.3 60 86.7
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.2e-25 121.3 60 86.7
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.2e-25 121.3 67 73.1
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 1.6e-25 120.9 61 82.0
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-25 120.6 68 79.4
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-25 120.6 68 79.4
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.0e-25 120.6 60 81.7
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.7e-25 120.2 59 84.7
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 2.7e-25 120.2 60 83.3
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.7e-25 120.2 61 82.0
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.7e-25 120.2 61 82.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.7e-25 120.2 61 82.0
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 3.5e-25 119.8 59 86.4
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 3.5e-25 119.8 59 86.4
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.5e-25 119.8 61 83.6
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.5e-25 119.4 60 85.0
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 5.9e-25 119.0 60 81.7
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.9e-25 119.0 60 85.0
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 5.9e-25 119.0 60 81.7
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 7.7e-25 118.6 67 73.1
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 7.7e-25 118.6 60 81.7
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.0e-24 118.2 60 83.3
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.0e-24 118.2 65 81.5
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.0e-24 118.2 60 80.0
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.0e-24 118.2 60 80.0
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 1.7e-24 117.5 60 81.7
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.7e-24 117.5 60 80.0
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.2e-24 117.1 59 83.1
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 2.2e-24 117.1 60 80.0
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 2.2e-24 117.1 60 80.0
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.9e-24 116.7 59 84.7
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.9e-24 116.7 67 73.1
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.9e-24 116.7 67 73.1
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.8e-24 116.3 62 77.4
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 5.0e-24 115.9 67 71.6
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.0e-24 115.9 61 80.3
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 6.5e-24 115.5 66 74.2
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 6.5e-24 115.5 60 78.3
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 8.5e-24 115.2 60 78.3
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.1e-23 114.8 69 68.1
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.9e-23 114.0 61 77.0
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-23 114.0 60 78.3
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.9e-23 114.0 58 81.0
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.9e-23 114.0 67 73.1
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 2.5e-23 113.6 60 76.7
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 3.2e-23 113.2 65 78.5
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.2e-23 113.2 60 80.0
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 4.2e-23 112.8 60 80.0
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.2e-23 112.8 65 76.9
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 4.2e-23 112.8 61 77.0
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 5.5e-23 112.5 66 72.7
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 7.2e-23 112.1 84 61.9
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.2e-23 112.1 60 78.3
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.2e-23 112.1 67 68.7
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.6e-22 110.9 61 77.0
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 2.1e-22 110.5 74 64.9
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 3.6e-22 109.8 60 78.3
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 3.6e-22 109.8 62 74.2
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 3.6e-22 109.8 61 75.4
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 4.7e-22 109.4 60 73.3
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 4.7e-22 109.4 60 75.0
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 6.1e-22 109.0 66 68.2
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 8.0e-22 108.6 60 76.7
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.0e-22 108.6 60 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 1.0e-21 108.2 59 74.6
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.8e-21 107.5 67 67.2
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.8e-21 107.5 67 67.2
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.8e-21 107.5 60 73.3
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 2.3e-21 107.1 96 55.2
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 2.3e-21 107.1 58 75.9
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.3e-21 107.1 61 73.8
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 4.0e-21 106.3 59 67.8
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.0e-21 106.3 56 73.2
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 8.8e-21 105.1 71 66.2
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 8.8e-21 105.1 56 75.0
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.2e-20 104.8 60 71.7
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.5e-20 104.4 60 71.7
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.5e-20 104.4 60 71.7
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.0e-20 104.0 58 74.1
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.0e-20 104.0 60 70.0
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 2.6e-20 103.6 58 70.7
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.6e-20 103.6 60 73.3
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 3.4e-20 103.2 60 70.0
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 9.8e-20 101.7 63 68.3
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 1.3e-19 101.3 60 66.7
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 2.2e-19 100.5 89 55.1
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.2e-19 100.5 64 60.9
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.4e-18 95.9 55 67.3
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.4e-18 95.9 55 67.3
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 7.0e-18 95.5 58 65.5
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 1.6e-17 94.4 58 65.5
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 3.5e-17 93.2 63 61.9
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 3.5e-17 93.2 59 66.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 4.5e-17 92.8 60 63.3
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 4.5e-17 92.8 59 61.0
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 2.2e-16 90.5 48 79.2
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.1e-15 88.2 58 62.1
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.9e-15 87.4 60 61.7
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.9e-15 87.4 60 61.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.5e-15 87.0 60 60.0
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.2e-15 86.3 43 86.0
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.2e-15 86.3 43 86.0
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.8e-14 83.6 65 56.9
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.3e-13 80.5 62 61.3
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 6.3e-11 72.4 49 65.3
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-10 71.6 42 71.4
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 3.1e-10 70.1 40 67.5
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 2.9e-08 63.5 60 51.7
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 1.1e-07 61.6 60 50.0
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 1.5e-07 61.2 32 84.4
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.3e-07 60.1 48 54.2
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.1e-06 57.4 60 48.3


User provided reference genes

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