Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 3.7e-160 568.2 291 100.0
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 2.6e-100 369.4 312 70.2
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.6e-70 270.4 315 57.5
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 2.5e-63 246.5 318 55.3
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 3.3e-63 246.1 308 54.9
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 9.5e-63 244.6 306 52.3
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 2.9e-59 233.0 317 52.4
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.7e-59 232.6 323 51.4
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 3.0e-56 223.0 311 51.8
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.0e-56 223.0 322 50.9
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 3.9e-56 222.6 315 51.1
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 6.6e-56 221.9 317 51.1
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 3.3e-55 219.5 314 53.2
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 4.7e-54 215.7 332 50.6
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 4.7e-54 215.7 332 50.6
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.1e-53 214.5 310 49.7
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 6.8e-53 211.8 333 49.8
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 4.4e-52 209.1 323 52.0
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 3.0e-48 196.4 337 47.5
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 3.2e-42 176.4 313 46.3
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 4.6e-41 172.6 304 43.8
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.1e-39 167.9 320 45.3
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 5.6e-39 165.6 306 42.8
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 1.1e-37 161.4 326 42.3
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 3.1e-37 159.8 326 41.4
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.3e-35 154.5 329 41.6
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 1.3e-32 144.4 346 38.7
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 5.1e-32 142.5 316 42.1
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 1.1e-31 141.4 328 39.6
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 3.3e-31 139.8 334 39.2
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 2.8e-30 136.7 232 47.0
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 3.6e-30 136.3 230 46.5
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.8e-29 134.0 330 38.5
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.8e-29 134.0 311 38.6
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 3.1e-29 133.3 333 37.5
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 6.9e-29 132.1 332 38.6
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 3.4e-28 129.8 326 38.0
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 5.8e-28 129.0 308 39.0
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 1.3e-27 127.9 308 40.6
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.2e-27 127.1 326 37.4
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 3.8e-27 126.3 333 37.8
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 3.8e-27 126.3 336 37.2
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 3.2e-26 123.2 226 42.5
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 4.2e-26 122.9 322 37.9
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 7.1e-26 122.1 338 36.7
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 3.9e-24 116.3 240 42.1
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 6.6e-24 115.5 314 37.6
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 1.1e-23 114.8 258 39.1
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 1.1e-23 114.8 324 37.3
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 2.4e-21 107.1 341 32.6
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.2e-20 104.8 348 36.5
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.5e-20 104.4 341 33.7
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 5.8e-20 102.4 248 36.3
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 5.8e-20 102.4 176 42.6
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 9.9e-20 101.7 314 36.0
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 9.9e-20 101.7 313 34.8
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 8.4e-19 98.6 279 33.7
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 8.4e-19 98.6 355 32.7
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 8.4e-19 98.6 346 32.1
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 8.4e-19 98.6 348 31.9
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 8.4e-19 98.6 287 36.9
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 1.9e-18 97.4 328 33.5
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.9e-18 97.4 160 48.1
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 2.4e-18 97.1 357 32.2
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 7.1e-18 95.5 327 33.0
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 1.2e-17 94.7 351 34.8
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 1.6e-17 94.4 350 32.3
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 3.5e-17 93.2 350 32.6
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 4.6e-17 92.8 340 29.7
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 2.3e-16 90.5 236 35.6
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 3.0e-16 90.1 162 45.1
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 1.6e-14 84.3 343 32.7
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 2.8e-14 83.6 159 44.0
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 3.7e-14 83.2 325 29.2
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 4.8e-14 82.8 349 32.7
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 4.8e-14 82.8 349 32.7
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 8.1e-14 82.0 349 32.7
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 8.1e-14 82.0 218 36.2
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 4.0e-13 79.7 220 38.2
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 1.2e-12 78.2 309 32.7
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 3.4e-12 76.6 218 34.4
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 4.5e-12 76.3 235 34.5
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.3e-11 74.7 182 34.6
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 3.8e-11 73.2 325 32.0
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 2.1e-09 67.4 188 36.7
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 8.7e-08 62.0 401 26.7
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 1.3e-06 58.2 252 31.0
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 6.2e-06 55.8 171 36.3
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 8.2e-06 55.5 353 26.9


User provided reference genes

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