Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 0.0e+00 1833.9 900 100.0
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 0.0e+00 1798.1 893 98.9
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 0.0e+00 1714.5 895 95.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 6.1e-302 1040.8 914 59.2
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 3.7e-299 1031.6 926 57.5
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.0e-297 1025.8 903 59.0
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 3.6e-294 1015.0 932 57.8
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.4e-290 1003.0 926 55.5
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.5e-287 993.0 925 56.6
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 5.2e-285 984.6 925 56.3
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.6e-281 973.0 920 56.3
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 4.4e-276 954.9 873 57.5
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 5.9e-273 944.5 899 56.5
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 6.8e-269 931.0 893 57.0
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 2.6e-268 929.1 902 54.2
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.1e-266 923.7 1117 47.4
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 6.0e-265 917.9 903 53.6
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 8.6e-264 914.1 902 53.7
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 2.4e-258 896.0 920 52.1
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 9.2e-258 894.0 920 52.1
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 6.0e-257 891.3 913 52.4
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 8.6e-256 887.5 868 56.1
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 8.6e-256 887.5 899 52.2
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.9e-251 872.5 1114 44.8
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.4e-250 869.4 1119 45.0
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 3.2e-250 869.0 927 49.7
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.9e-247 859.8 823 55.0
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.0e-240 837.4 1118 43.6
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.4e-237 827.0 923 47.7
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 5.3e-237 825.1 890 49.8
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 9.0e-237 824.3 892 48.9
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.5e-236 823.5 911 47.5
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 5.4e-234 815.1 909 48.7
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 3.5e-233 812.4 905 46.9
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.0e-232 810.8 906 49.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 5.6e-231 805.1 906 48.3
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 5.6e-231 805.1 914 46.5
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.3e-230 803.9 914 46.5
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.6e-230 803.5 897 49.3
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 3.6e-230 802.4 913 47.8
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 4.8e-230 802.0 891 47.7
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 6.2e-230 801.6 892 49.3
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.1e-229 800.8 892 49.6
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 3.1e-229 799.3 894 48.0
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 4.0e-229 798.9 905 49.5
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 1.5e-228 797.0 894 48.1
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 3.4e-228 795.8 912 46.3
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 3.4e-228 795.8 913 47.1
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 5.8e-228 795.0 910 47.0
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 7.6e-228 794.7 935 47.4
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 1.1e-226 790.8 898 47.4
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 1.4e-226 790.4 903 46.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 4.2e-226 788.9 908 47.7
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.7e-225 786.2 1096 42.1
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 3.0e-224 782.7 900 48.2
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 9.6e-223 777.7 899 46.3
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 9.6e-223 777.7 897 48.6
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 9.6e-223 777.7 899 48.4
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.0e-219 767.7 884 47.7
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.3e-219 767.3 900 46.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 7.1e-218 761.5 1096 41.0
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.5e-212 743.8 908 44.7
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.8e-211 739.2 646 58.7
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.4e-210 737.3 924 46.8
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 3.0e-208 729.6 652 58.3
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.5e-207 726.5 926 44.8
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 5.7e-207 725.3 1091 40.1
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 7.4e-207 724.9 927 44.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.1e-205 719.5 904 45.9
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.9e-203 713.0 904 45.2
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 7.9e-201 704.9 896 45.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.7e-198 697.2 903 44.5
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 6.3e-198 695.3 896 44.8
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.4e-197 694.1 1061 40.5
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 4.1e-197 692.6 898 43.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 7.9e-193 678.3 804 47.3
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 3.0e-192 676.4 908 43.9
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.3e-191 672.9 857 44.6
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 2.2e-190 670.2 921 43.6
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.2e-184 649.0 795 45.9
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.1e-178 631.3 1059 37.4
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.7e-177 626.7 855 43.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.2e-176 622.5 869 42.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 9.8e-175 618.2 804 44.7
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 9.8e-175 618.2 1127 35.9
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.3e-174 617.8 1036 38.5
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 7.0e-173 612.1 879 41.2
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.8e-169 600.1 771 44.6
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 4.7e-169 599.4 972 37.6
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.6e-167 593.6 724 47.7
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.5e-162 577.0 952 37.1
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 3.7e-158 563.1 713 45.9
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 6.6e-155 552.4 490 56.9
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.6e-151 540.4 524 52.9
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 8.6e-139 498.8 565 47.6
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 3.8e-134 483.4 598 46.2
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.2e-129 468.4 950 34.0
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.6e-127 460.7 898 34.3
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 7.6e-127 459.1 957 32.6
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.4e-126 456.1 615 42.6
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 1.6e-124 451.4 518 48.6
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 8.1e-121 439.1 942 32.8
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 6.0e-116 422.9 725 37.0
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 5.1e-115 419.9 563 44.6
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 8.4e-110 402.5 592 39.2
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.0e-107 395.6 1204 28.2
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.2e-94 351.3 379 49.6
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.9e-94 350.9 413 46.7
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 2.5e-90 337.8 367 49.6
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.4e-85 322.0 676 35.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 2.7e-84 317.8 476 40.3
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 5.1e-83 313.5 365 45.5
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 3.7e-73 280.8 365 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 8.5e-70 269.6 926 29.0
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.5e-69 268.1 315 49.8
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.6e-68 265.4 300 46.7
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.5e-66 258.8 212 61.3
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.0e-63 248.4 233 58.4
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 7.7e-63 246.5 212 57.1
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 2.3e-59 235.0 158 67.1
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.6e-58 231.5 207 58.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.7e-57 228.8 205 53.7
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-51 209.1 647 26.7
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 5.2e-51 207.2 204 52.9
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 4.1e-48 197.6 266 44.7
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.5e-39 167.9 335 34.3
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 3.3e-37 161.4 109 67.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 5.8e-34 150.6 784 23.9
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.1e-28 132.1 121 57.0
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 8.9e-27 126.7 84 64.3
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 3.5e-23 114.8 141 46.1
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 6.6e-22 110.5 205 32.7
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 6.8e-19 100.5 87 57.5
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 2.2e-17 95.5 143 42.0
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 9.0e-11 73.6 154 31.2
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 1.1e-08 66.6 106 36.8
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 3.0e-06 58.5 42 64.3
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 3.0e-06 58.5 31 74.2


User provided reference genes

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