Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0135800 Salix brachista HOM05D002369 ORTHO05D002435 1.4e-99 366.3 189 100.0
Potri.005G179600 Populus trichocarpa HOM05D002369 ORTHO05D002435 2.9e-36 156.0 97 83.5
Potri.002G081500 Populus trichocarpa HOM05D002369 ORTHO05D002435 2.6e-21 106.3 84 67.9
Manes.02G165500 Manihot esculenta HOM05D002369 ORTHO05D002435 1.1e-19 100.9 97 56.7
Manes.18G079300 Manihot esculenta HOM05D002369 ORTHO05D002435 7.4e-16 88.2 68 61.8
Eucgr.G01916 Eucalyptus grandis HOM05D002369 ORTHO05D002435 6.2e-15 85.1 84 50.0
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-14 83.6 55 69.1
PGR042G0876 Punica granatum HOM05D002369 ORTHO05D002435 3.1e-14 82.8 103 48.5
Peaxi162Scf00876g00115 Petunia axillaris HOM05D002369 ORTHO05D002435 5.3e-14 82.0 89 55.1
Hma1.2p1_0214F.1_g090750 Hydrangea macrophylla HOM05D002369 ORTHO05D002435 9.0e-14 81.3 62 62.9
Nitab4.5_0001159g0050 Nicotiana tabacum HOM05D002369 ORTHO05D002435 9.0e-14 81.3 82 56.1
FAN15G1792 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.2e-13 80.9 81 56.8
TWI18G0883 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 1.5e-13 80.5 66 62.1
FvH4_2g30640 Fragaria vesca HOM05D002369 ORTHO05D002435 2.0e-13 80.1 81 56.8
Glyma.17G200900 Glycine max HOM05D002369 ORTHO05D002435 4.5e-13 79.0 65 56.9
VMungo0647G1284 Vigna mungo HOM05D002369 ORTHO05D002435 4.5e-13 79.0 65 56.9
FAN24G2614 Fragaria x ananassa HOM05D002369 ORTHO05D002435 7.6e-13 78.2 101 47.5
Actinidia29334 Actinidia chinensis HOM05D002369 ORTHO05D002435 1.0e-12 77.8 94 51.1
arahy.Tifrunner.gnm1.ann1.ML3LVJ Arachis hypogaea HOM05D002369 ORTHO05D002435 1.0e-12 77.8 78 56.4
CiPaw.08G017400 Carya illinoinensis HOM05D002369 ORTHO05D002435 1.0e-12 77.8 56 66.1
FAN27G1471 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.3e-12 77.4 80 55.0
Glyma.14G132400 Glycine max HOM05D002369 ORTHO05D002435 1.3e-12 77.4 104 47.1
QL12p024631 Quercus lobata HOM05D002369 ORTHO05D002435 1.3e-12 77.4 59 62.7
Solyc12g096270.2 Solanum lycopersicum HOM05D002369 ORTHO05D002435 1.3e-12 77.4 58 65.5
Sopen12g032130 Solanum pennellii HOM05D002369 ORTHO05D002435 1.7e-12 77.0 58 65.5
CAN.G940.19 Capsicum annuum HOM05D002369 ORTHO05D002435 2.2e-12 76.6 71 57.7
Cc03_g16050 Coffea canephora HOM05D002369 ORTHO05D002435 2.2e-12 76.6 56 62.5
CiPaw.07G215100 Carya illinoinensis HOM05D002369 ORTHO05D002435 3.8e-12 75.9 61 60.7
Lalb_Chr08g0243661 Lupinus albus HOM05D002369 ORTHO05D002435 3.8e-12 75.9 54 64.8
PGSC0003DMG400032814 Solanum tuberosum HOM05D002369 ORTHO05D002435 3.8e-12 75.9 73 57.5
FAN20G1891 Fragaria x ananassa HOM05D002369 ORTHO05D002435 4.9e-12 75.5 100 44.0
Lj1g0015278 Lotus japonicus HOM05D002369 ORTHO05D002435 4.9e-12 75.5 62 58.1
Psat6g031800 Pisum sativum HOM05D002369 ORTHO05D002435 6.5e-12 75.1 54 63.0
CANSAT25G3773 Cannabis sativa HOM05D002369 ORTHO05D002435 8.4e-12 74.7 60 61.7
MD08G1133500 Malus domestica HOM05D002369 ORTHO05D002435 8.4e-12 74.7 54 63.0
ECA246G4472 Erigeron canadensis HOM05D002369 ORTHO05D002435 1.1e-11 74.3 64 57.8
RcHm_v2.0_Chr6g0312271 Rosa chinensis HOM05D002369 ORTHO05D002435 1.1e-11 74.3 64 59.4
DCAR_000696 Daucus carota HOM05D002369 ORTHO05D002435 1.4e-11 73.9 77 49.4
Medtr1g010050 Medicago truncatula HOM05D002369 ORTHO05D002435 1.4e-11 73.9 54 61.1
vmacro05086 Vaccinium macrocarpon HOM05D002369 ORTHO05D002435 1.4e-11 73.9 102 45.1
Nitab4.5_0001327g0040 Nicotiana tabacum HOM05D002369 ORTHO05D002435 1.9e-11 73.6 82 53.7
MELO3C003646.2 Cucumis melo HOM05D002369 ORTHO05D002435 2.5e-11 73.2 58 58.6
CsaV3_3G046910 Cucumis sativus L. HOM05D002369 ORTHO05D002435 2.5e-11 73.2 58 58.6
Prupe.2G330000 Prunus persica HOM05D002369 ORTHO05D002435 2.5e-11 73.2 56 60.7
Sed0023641 Sechium edule HOM05D002369 ORTHO05D002435 2.5e-11 73.2 78 48.7
Cpa.g.sc42.61 Carica papaya HOM05D002369 ORTHO05D002435 3.2e-11 72.8 76 48.7
Prupe.1G462900 Prunus persica HOM05D002369 ORTHO05D002435 3.2e-11 72.8 56 60.7
Solyc08g005950.2 Solanum lycopersicum HOM05D002369 ORTHO05D002435 4.2e-11 72.4 90 47.8
Phvul.001G057600 Phaseolus vulgaris HOM05D002369 ORTHO05D002435 5.5e-11 72.0 106 41.5
EL10Ac2g03650 Beta vulgaris HOM05D002369 ORTHO05D002435 1.2e-10 70.9 56 57.1
AUR62028028 Chenopodium quinoa HOM05D002369 ORTHO05D002435 1.2e-10 70.9 92 42.4
TPR.G11982 Trifolium pratense HOM05D002369 ORTHO05D002435 2.1e-10 70.1 54 57.4
ClCG05G017400 Citrullus lanatus HOM05D002369 ORTHO05D002435 2.7e-10 69.7 67 53.7
MD15G1110600 Malus domestica HOM05D002369 ORTHO05D002435 4.6e-10 68.9 54 57.4
Oeu007491.1 Olea europaea HOM05D002369 ORTHO05D002435 4.6e-10 68.9 93 43.0
Peaxi162Scf00045g01334 Petunia axillaris HOM05D002369 ORTHO05D002435 4.6e-10 68.9 53 62.3
HanXRQChr17g0538641 Helianthus annuus HOM05D002369 ORTHO05D002435 6.1e-10 68.6 89 43.8
CAN.G947.19 Capsicum annuum HOM05D002369 ORTHO05D002435 1.0e-09 67.8 95 44.2
Dinv09446 Davidia involucrata HOM05D002369 ORTHO05D002435 1.0e-09 67.8 53 64.2
GSVIVG01035600001 Vitis vinifera HOM05D002369 ORTHO05D002435 1.8e-09 67.0 50 64.0
Nn5g26942 Nelumbo nucifera HOM05D002369 ORTHO05D002435 3.0e-09 66.2 56 55.4
Migut.A00517 Erythranthe guttata HOM05D002369 ORTHO05D002435 3.9e-09 65.9 55 54.5
MSTRG.11828 Avicennia marina HOM05D002369 ORTHO05D002435 1.1e-08 64.3 55 52.7
unitig_748.g7385 Utricularia gibba HOM05D002369 ORTHO05D002435 1.9e-08 63.5 78 43.6
Sopen08g001920 Solanum pennellii HOM05D002369 ORTHO05D002435 3.3e-08 62.8 48 62.5
FAN15G0768 Fragaria x ananassa HOM05D002369 ORTHO05D002435 7.4e-08 61.6 94 44.7
AUR62029992 Chenopodium quinoa HOM05D000148 ORTHO05D000081 3.7e-07 59.3 80 40.0
SalBow4G1874 Salvia bowleyana HOM05D002369 ORTHO05D002435 4.8e-07 58.9 53 50.9
PGSC0003DMG401016272 Solanum tuberosum HOM05D002369 ORTHO05D002435 4.8e-07 58.9 58 46.6
Cc03_g04470 Coffea canephora HOM05D002369 ORTHO05D002435 1.1e-06 57.8 53 47.2
DCAR_002359 Daucus carota HOM05D002369 ORTHO05D002435 1.1e-06 57.8 51 51.0
TAR549G0004 Trochodendron aralioides HOM05D002369 ORTHO05D002435 1.1e-06 57.8 53 49.1
CsaV3_2G013330 Cucumis sativus L. HOM05D002369 ORTHO05D002435 1.4e-06 57.4 51 49.0
Sabra15G0152500 Salix brachista HOM05D002369 ORTHO05D002435 1.4e-06 57.4 51 47.1
Zm00001eb231850 Zea mays HOM05D002369 ORTHO05D002435 1.4e-06 57.4 54 44.4
Sed0012249 Sechium edule HOM05D002369 ORTHO05D002435 1.8e-06 57.0 51 49.0
TWI53G0837 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 1.8e-06 57.0 74 36.5
Dinv44599 Davidia involucrata HOM05D002369 ORTHO05D002435 2.4e-06 56.6 61 39.3
Duzib212G0042 Durio zibethinus HOM05D002369 ORTHO05D002435 2.4e-06 56.6 51 47.1
HanXRQChr03g0092851 Helianthus annuus HOM05D002369 ORTHO05D002435 2.4e-06 56.6 53 47.2
Lsat_1_v5_gn_3_123940 Lactuca sativa HOM05D002369 ORTHO05D002435 2.4e-06 56.6 51 49.0
Lj5g0000230 Lotus japonicus HOM05D002369 ORTHO05D002435 2.4e-06 56.6 53 47.2
Medtr1g071100 Medicago truncatula HOM05D002369 ORTHO05D002435 2.4e-06 56.6 63 41.3
Oeu002907.1 Olea europaea HOM05D002369 ORTHO05D002435 2.4e-06 56.6 58 43.1
Oeu043467.1 Olea europaea HOM05D002369 ORTHO05D002435 2.4e-06 56.6 58 43.1
Ciclev10006282m.g Citrus clementina HOM05D002369 ORTHO05D002435 3.1e-06 56.2 59 44.1
Gohir.A09G220600 Gossypium hirsutum HOM05D002369 ORTHO05D002435 3.1e-06 56.2 51 49.0
Gohir.D09G222900 Gossypium hirsutum HOM05D002369 ORTHO05D002435 3.1e-06 56.2 51 49.0
Gorai.006G244200 Gossypium raimondii HOM05D002369 ORTHO05D002435 3.1e-06 56.2 51 49.0
Potri.015G142500 Populus trichocarpa HOM05D002369 ORTHO05D002435 3.1e-06 56.2 51 45.1
Thecc.04G241600 Theobroma cacao HOM05D002369 ORTHO05D002435 3.1e-06 56.2 51 47.1
CiPaw.01G193600 Carya illinoinensis HOM05D002369 ORTHO05D002435 4.1e-06 55.8 51 45.1
ClCG06G006560 Citrullus lanatus HOM05D002369 ORTHO05D002435 4.1e-06 55.8 82 37.8
arahy.Tifrunner.gnm1.ann1.I7ZHZM Arachis hypogaea HOM05D002369 ORTHO05D002435 5.3e-06 55.5 71 43.7
Potri.002G046900 Populus trichocarpa HOM05D002369 ORTHO05D002435 5.3e-06 55.5 50 48.0
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 5.3e-06 55.5 53 45.3
Dinv14063 Davidia involucrata HOM05D002369 ORTHO05D002435 6.9e-06 55.1 51 45.1
Eucgr.H03396 Eucalyptus grandis HOM05D002369 ORTHO05D002435 6.9e-06 55.1 51 47.1
Manes.03G171400 Manihot esculenta HOM05D002369 ORTHO05D002435 6.9e-06 55.1 51 45.1
Nn1g02504 Nelumbo nucifera HOM05D002369 ORTHO05D002435 6.9e-06 55.1 73 35.6
SEGI_39295 Sequoiadendron giganteum HOM05D002369 ORTHO05D002435 6.9e-06 55.1 63 44.4
GSVIVG01018076001 Vitis vinifera HOM05D002369 ORTHO05D002435 6.9e-06 55.1 51 51.0
Actinidia08457 Actinidia chinensis HOM05D002369 ORTHO05D002435 9.0e-06 54.7 56 46.4
FvH4_4g01800 Fragaria vesca HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 45.1
FAN12G3469 Fragaria x ananassa HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 45.1
FAN17G0856 Fragaria x ananassa HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 45.1
FAN22G2026 Fragaria x ananassa HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 45.1
Nitab4.5_0000941g0110 Nicotiana tabacum HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 47.1
Sabra05G0165600 Salix brachista HOM05D002369 ORTHO05D002435 9.0e-06 54.7 50 46.0
Solyc09g082940.3 Solanum lycopersicum HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 47.1
Sopen09g031810 Solanum pennellii HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 47.1
PGSC0003DMG400006078 Solanum tuberosum HOM05D002369 ORTHO05D002435 9.0e-06 54.7 51 47.1


User provided reference genes

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