Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 3.6e-284 981.1 573 100.0
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.1e-208 730.3 578 80.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.4e-163 580.5 587 65.8
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 7.9e-154 548.1 569 62.9
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 5.0e-132 475.7 538 58.9
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.3e-121 440.3 548 53.3
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.8e-113 412.1 557 50.3
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.6e-109 401.0 557 49.6
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 3.5e-109 399.8 568 50.5
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.9e-107 394.0 551 50.1
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.8e-105 387.5 538 49.8
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.5e-104 384.4 553 49.9
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 9.8e-104 381.7 589 47.0
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.7e-103 379.8 545 49.5
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 2.7e-101 373.6 517 50.9
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.9e-100 370.2 550 48.5
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.1e-99 368.2 553 50.5
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 7.3e-99 365.5 527 49.0
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 8.9e-97 358.6 545 47.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.5e-96 357.8 520 47.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.6e-96 357.1 529 49.1
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.6e-96 357.1 554 46.8
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 5.8e-96 355.9 534 47.6
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 9.8e-96 355.1 535 48.2
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 6.4e-95 352.4 543 48.8
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 8.3e-95 352.1 588 45.6
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.4e-94 351.3 545 48.6
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.0e-93 345.9 523 48.6
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 6.6e-92 342.4 548 46.4
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.9e-91 340.9 528 47.3
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.3e-91 340.1 549 45.5
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 4.3e-91 339.7 545 46.4
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-90 338.2 543 47.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.8e-90 337.0 549 46.4
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 6.2e-90 335.9 567 45.9
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.8e-89 334.3 561 47.1
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 2.3e-89 334.0 536 46.8
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 3.7e-87 326.6 620 43.7
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-85 321.2 533 44.7
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.7e-85 320.5 536 44.2
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.5e-83 314.7 546 43.4
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.3e-83 313.5 546 46.0
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.6e-83 312.8 542 46.1
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 9.5e-83 312.0 476 48.1
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.1e-82 310.8 343 60.1
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 4.7e-82 309.7 549 44.6
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 8.1e-82 308.9 543 42.2
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 2.3e-81 307.4 521 44.7
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.2e-81 306.2 539 41.9
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 3.4e-80 303.5 580 45.2
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.3e-79 301.6 524 42.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 2.9e-79 300.4 556 41.7
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 8.3e-79 298.9 527 43.8
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.9e-78 297.7 558 42.7
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 5.4e-78 296.2 505 47.3
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-76 291.6 533 41.5
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 2.3e-76 290.8 496 45.0
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.3e-76 290.8 533 41.7
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 3.0e-76 290.4 491 45.6
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.6e-74 283.5 533 41.7
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 3.6e-74 283.5 517 42.4
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 6.2e-74 282.7 589 42.1
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.8e-73 281.2 419 49.9
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 2.4e-73 280.8 560 39.6
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.9e-73 278.9 512 42.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.7e-71 274.6 269 62.8
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 4.2e-70 270.0 522 44.4
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.6e-69 268.1 527 43.6
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.7e-69 267.3 527 39.3
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.5e-69 266.9 538 41.6
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.0e-68 265.4 521 39.0
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.3e-68 265.0 516 43.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 5.1e-68 263.1 544 39.3
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 8.7e-68 262.3 539 39.1
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.1e-67 261.9 481 40.1
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.1e-65 255.4 539 38.2
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 4.0e-65 253.4 341 53.1
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 6.9e-65 252.7 546 37.9
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.4e-63 245.7 529 39.7
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.2e-62 243.4 509 40.3
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.1e-61 241.1 553 37.1
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.1e-61 241.1 520 40.2
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.1e-61 241.1 513 41.3
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.3e-60 238.4 495 39.0
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.3e-60 237.7 504 37.5
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 6.6e-60 236.1 514 40.5
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 6.6e-60 236.1 329 48.3
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-59 235.3 503 42.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.9e-59 234.6 497 40.8
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.9e-59 234.6 551 36.3
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.5e-59 234.2 532 38.9
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.5e-59 234.2 518 38.6
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.3e-58 231.9 360 48.1
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 4.8e-58 229.9 511 38.6
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.4e-57 228.4 507 38.3
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 3.1e-57 227.3 513 37.2
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 1.7e-55 221.5 579 37.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.7e-55 221.5 496 39.7
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.9e-55 220.7 547 35.6
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 6.4e-55 219.5 478 37.7
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.1e-54 218.8 521 36.9
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 2.4e-54 217.6 513 35.5
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.2e-53 215.3 506 37.2
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-53 214.9 513 36.6
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 4.6e-53 213.4 512 37.5
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.3e-52 211.1 555 33.2
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 6.7e-52 209.5 503 36.6
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.8e-50 203.4 523 36.9
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 9.0e-49 199.1 515 35.5
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.9e-47 194.1 523 35.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.9e-36 157.1 140 62.9
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 7.4e-35 152.9 264 42.8
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.1e-33 147.5 450 35.8
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 5.9e-32 143.3 255 41.2
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.3e-28 131.3 98 68.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 3.3e-27 127.5 119 60.5
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 9.7e-27 125.9 407 32.7
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.2e-23 114.8 182 42.3
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.9e-22 111.7 383 31.1
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 4.2e-22 110.5 287 35.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.5e-22 110.2 372 33.6
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 5.5e-22 110.2 277 36.8
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.1e-21 108.2 523 28.1
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 7.4e-19 99.8 542 27.5
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 2.2e-18 98.2 114 47.4
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 4.1e-17 94.0 102 51.0
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 9.1e-17 92.8 85 62.4
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.2e-16 92.4 59 76.3
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.5e-16 92.0 264 37.9
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.9e-16 90.1 325 30.8
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 9.4e-14 82.8 129 46.5
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.4e-11 73.2 59 61.0
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.1e-09 67.4 76 50.0
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.1e-09 66.2 58 55.2
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 1.7e-07 62.0 373 29.8
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 6.5e-07 60.1 60 50.0
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 4.2e-06 57.4 113 35.4
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 5.5e-06 57.0 284 27.8


User provided reference genes

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