Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 4.5e-214 747.7 381 100.0
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 2.4e-154 549.3 386 76.7
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.4e-117 427.2 379 62.3
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 1.1e-111 407.5 375 59.5
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 3.6e-110 402.5 376 60.4
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 8.8e-109 397.9 379 56.7
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.7e-107 393.7 378 57.4
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 2.2e-107 393.3 377 58.1
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 3.7e-107 392.5 378 56.9
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 3.5e-105 386.0 377 56.5
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 3.5e-105 386.0 377 57.6
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 3.5e-105 386.0 375 56.8
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 2.2e-104 383.3 373 56.8
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.0e-104 382.1 376 58.2
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 5.0e-104 382.1 376 58.0
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.5e-104 381.3 376 58.2
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.4e-103 380.6 378 56.6
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.2e-103 379.4 376 58.0
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 4.2e-103 379.0 392 55.4
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 1.2e-102 377.5 377 55.7
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 2.1e-102 376.7 376 55.9
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.7e-102 376.3 372 55.4
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 2.7e-102 376.3 376 56.6
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 4.7e-102 375.6 378 55.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.0e-101 374.4 379 56.5
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 3.0e-101 372.9 380 55.5
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 3.9e-101 372.5 376 56.4
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.2e-101 372.1 377 55.7
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.7e-101 371.7 377 55.7
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 7.4e-100 368.2 375 55.2
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 2.8e-99 366.3 385 54.8
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.7e-99 365.9 377 55.2
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 3.7e-99 365.9 377 54.1
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 4.8e-99 365.5 365 57.5
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 2.4e-98 363.2 379 54.6
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 3.1e-98 362.8 380 54.7
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 7.0e-98 361.7 376 53.2
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.6e-97 360.5 378 54.5
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 2.0e-97 360.1 377 53.6
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 2.6e-97 359.8 380 53.2
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 2.6e-97 359.8 374 53.5
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 4.5e-97 359.0 377 53.8
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.5e-97 359.0 377 53.8
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 7.7e-97 358.2 372 53.8
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 3.8e-96 355.9 378 52.1
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 6.5e-96 355.1 378 53.7
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.1e-95 354.4 378 54.0
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 3.2e-95 352.8 431 49.4
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 4.2e-95 352.4 377 52.0
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 7.2e-95 351.7 384 51.6
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 9.4e-95 351.3 381 52.8
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 2.1e-94 350.1 374 51.9
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.6e-92 343.2 378 51.6
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 5.7e-92 342.0 390 51.8
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 5.7e-92 342.0 378 52.9
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 9.7e-92 341.3 378 52.4
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.3e-91 340.9 375 52.8
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 2.8e-91 339.7 416 49.8
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 3.7e-91 339.3 427 48.2
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.2e-89 334.3 377 52.0
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.2e-89 334.3 380 53.2
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 5.9e-89 332.0 375 49.9
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 7.7e-89 331.6 379 51.5
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.7e-88 330.5 383 49.6
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 8.5e-88 328.2 378 51.3
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.5e-87 327.4 377 50.9
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.9e-87 327.0 377 50.9
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 3.2e-87 326.2 360 51.7
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.1e-86 323.6 400 48.0
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 8.0e-86 321.6 378 51.9
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.4e-85 320.9 377 49.6
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 4.0e-85 319.3 376 50.8
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 6.8e-85 318.5 378 50.3
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 8.8e-85 318.2 375 50.4
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.2e-84 317.8 370 50.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.2e-84 317.8 383 49.6
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 9.8e-84 314.7 375 50.7
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.3e-83 314.3 375 50.7
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 1.3e-83 314.3 375 50.7
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.7e-83 313.9 377 48.5
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 8.3e-83 311.6 375 50.7
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 8.3e-83 311.6 360 50.6
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.1e-82 311.2 375 50.9
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-82 310.5 375 50.7
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.8e-82 310.5 375 50.7
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.8e-82 310.5 375 50.7
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.8e-82 310.5 387 50.1
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 2.4e-82 310.1 380 49.2
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 3.1e-82 309.7 377 49.3
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.7e-80 303.9 375 49.9
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 5.0e-80 302.4 377 48.0
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 5.0e-80 302.4 391 46.8
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 6.6e-80 302.0 377 49.6
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 6.6e-80 302.0 377 49.6
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 1.1e-79 301.2 399 47.4
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.5e-79 300.8 375 48.0
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.9e-79 300.4 378 45.2
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 3.3e-79 299.7 375 49.1
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 5.5e-79 298.9 377 48.0
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 6.1e-78 295.4 377 47.5
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 7.5e-76 288.5 328 51.2
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 3.7e-75 286.2 328 51.8
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.7e-75 286.2 375 46.7
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.8e-73 278.5 381 46.7
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 6.6e-72 275.4 376 44.4
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.4e-69 267.7 379 43.8
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.2e-68 264.6 326 47.5
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.6e-68 263.5 418 44.0
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 4.4e-68 262.7 215 67.4
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 5.8e-68 262.3 359 44.6
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.6e-62 244.2 266 53.8
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.1e-62 243.8 377 42.4
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.8e-61 240.7 363 41.3
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 9.2e-58 228.4 384 41.4
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 4.0e-53 213.0 370 38.6
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 2.6e-52 210.3 378 39.4
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 3.4e-52 209.9 333 41.7
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.1e-45 188.3 379 35.9
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 1.1e-42 178.3 199 51.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 7.1e-42 175.6 173 56.1
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.7e-40 168.7 264 43.2
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 8.7e-40 168.7 375 37.6
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 4.4e-36 156.4 394 32.2
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 2.3e-32 144.1 171 50.3
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 1.6e-30 137.9 171 48.5
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.8e-30 137.1 112 65.2
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 2.2e-27 127.5 237 33.3
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.7e-25 120.6 97 64.9
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 5.8e-20 102.8 95 56.8
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 6.5e-19 99.4 99 49.5
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 4.2e-18 96.7 330 27.6
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.5e-17 93.6 83 60.2
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 7.9e-17 92.4 54 83.3
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.3e-15 87.0 92 48.9
Sabra04G0117400 Salix brachista HOM05D000453 ORTHO05D349066 1.2e-12 78.6 54 75.9
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.0e-11 75.5 82 53.7
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 5.5e-10 69.7 53 67.9
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.7e-09 67.4 81 51.9
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.7e-09 67.4 81 51.9
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.7e-09 67.4 81 51.9
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.3e-08 64.3 82 42.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 5.1e-08 63.2 60 58.3
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 6.7e-08 62.8 61 57.4
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.3e-07 60.5 129 31.0
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 3.7e-06 57.0 68 51.5
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 4.8e-06 56.6 36 75.0


User provided reference genes

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