Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0128700 Salix brachista HOM05D000003 ORTHO05D000007 1.3e-94 349.7 174 100.0
Sabra08G0135000 Salix brachista HOM05D000003 ORTHO05D000007 1.1e-63 246.9 136 89.7
Sabra15G0066100 Salix brachista HOM05D000003 ORTHO05D000007 3.9e-48 195.3 130 75.4
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 5.9e-44 181.4 136 72.1
Sabra15G0085200 Salix brachista HOM05D000003 ORTHO05D000007 2.3e-40 169.5 136 67.6
Prupe.2G055100 Prunus persica HOM05D000003 ORTHO05D000007 3.7e-38 162.2 131 61.8
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 3.5e-36 155.6 86 88.4
Prupe.1G055400 Prunus persica HOM05D000003 ORTHO05D000007 1.9e-34 149.8 102 68.6
Prupe.3G109000 Prunus persica HOM05D000003 ORTHO05D000007 1.3e-27 127.1 89 66.3
Sabra12G0034500 Salix brachista HOM05D000003 ORTHO05D000007 1.6e-25 120.2 229 38.9
Prupe.2G097600 Prunus persica HOM05D000003 ORTHO05D000007 2.1e-25 119.8 107 57.9
Sabra06G0138800 Salix brachista HOM05D000003 ORTHO05D000007 2.2e-22 109.8 140 49.3
Prupe.3G109300 Prunus persica HOM05D000003 ORTHO05D000007 2.8e-22 109.4 75 65.3
Prupe.3G109600 Prunus persica HOM05D000003 ORTHO05D000007 4.9e-22 108.6 77 64.9
Prupe.2G199900 Prunus persica HOM05D000003 ORTHO05D000007 3.5e-20 102.4 122 43.4
Prupe.7G019600 Prunus persica HOM05D000003 ORTHO05D000007 1.7e-19 100.1 93 51.6
Prupe.1G179200 Prunus persica HOM05D000003 ORTHO05D000007 1.2e-17 94.0 125 41.6
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 2.0e-15 86.7 139 32.4
Prupe.4G246900 Prunus persica HOM05D000003 ORTHO05D000007 6.4e-14 81.6 90 46.7
Sabra16G0107600 Salix brachista HOM05D000003 ORTHO05D000007 5.4e-13 78.6 45 80.0
TWI56G1353 Tripterygium wilfordii HOM05D000003 ORTHO05D000007 9.2e-13 77.8 115 33.9
Atru.chr2.285 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-12 75.5 93 38.7
Atru.chr7.255 Acer truncatum HOM05D000003 ORTHO05D000007 7.8e-12 74.7 108 32.4
Prupe.2G044900 Prunus persica HOM05D000003 ORTHO05D000007 6.6e-11 71.6 54 57.4
RcHm_v2.0_Chr1g0342591 Rosa chinensis HOM05D000003 ORTHO05D000007 8.6e-11 71.2 90 43.3
THA.LOC104799464 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 8.6e-11 71.2 106 35.8
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 8.6e-11 71.2 97 35.1
Atru.chr11.754 Acer truncatum HOM05D000003 ORTHO05D000007 1.9e-10 70.1 144 30.6
QL02p014176 Quercus lobata HOM05D000003 ORTHO05D000007 2.5e-10 69.7 130 34.6
FvH4_2g12001 Fragaria vesca HOM05D010299 ORTHO05D000007 3.3e-10 69.3 84 45.2
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 3.3e-10 69.3 136 33.1
Ciclev10013460m.g Citrus clementina HOM05D000003 ORTHO05D000007 4.3e-10 68.9 117 33.3
Medtr3g026903 Medicago truncatula HOM05D000003 ORTHO05D000007 4.3e-10 68.9 113 30.1
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 4.3e-10 68.9 98 39.8
QL02p069773 Quercus lobata HOM05D000003 ORTHO05D000007 7.3e-10 68.2 88 36.4
QL04p067563 Quercus lobata HOM05D000003 ORTHO05D000007 9.5e-10 67.8 125 32.8
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 1.2e-09 67.4 40 82.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.6e-09 67.0 121 36.4
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 1.6e-09 67.0 120 36.7
FvH4_6g25792 Fragaria vesca HOM05D010299 ORTHO05D019146 2.1e-09 66.6 68 48.5
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-09 65.5 124 32.3
EL10Ac5g10755 Beta vulgaris HOM05D000003 ORTHO05D000007 6.2e-09 65.1 118 35.6
QL03p025122 Quercus lobata HOM05D000003 ORTHO05D000007 6.2e-09 65.1 88 35.2
Atru.chr12.2519 Acer truncatum HOM05D000003 ORTHO05D000007 8.0e-09 64.7 119 31.9
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 8.0e-09 64.7 81 40.7
Atru.chr6.752 Acer truncatum HOM05D000003 ORTHO05D000007 1.4e-08 63.9 69 40.6
Lj1g0004894 Lotus japonicus HOM05D000003 ORTHO05D000007 1.4e-08 63.9 83 38.6
Lj1g0012109 Lotus japonicus HOM05D000003 ORTHO05D000007 1.4e-08 63.9 76 36.8
Lj2g0021603 Lotus japonicus HOM05D000003 ORTHO05D000007 1.4e-08 63.9 80 41.2
Lj6g0003171 Lotus japonicus HOM05D000003 ORTHO05D000007 2.3e-08 63.2 90 33.3
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.1e-08 62.8 78 33.3
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.1e-08 62.8 78 33.3
QL12p006495 Quercus lobata HOM05D000003 ORTHO05D000007 3.1e-08 62.8 115 32.2
TPR.G29549 Trifolium pratense HOM05D000003 ORTHO05D000007 3.1e-08 62.8 106 32.1
Atru.chr2.1276 Acer truncatum HOM05D000003 ORTHO05D000007 4.0e-08 62.4 150 29.3
Lj3g0024630 Lotus japonicus HOM05D000003 ORTHO05D000007 4.0e-08 62.4 97 35.1
TPR.G511 Trifolium pratense HOM05D000003 ORTHO05D000007 4.0e-08 62.4 87 37.9
Lj6g0024012 Lotus japonicus HOM05D000003 ORTHO05D000007 5.2e-08 62.0 56 48.2
Atru.chr2.3120 Acer truncatum HOM05D000003 ORTHO05D000007 6.8e-08 61.6 144 31.2
Lj1g0021200 Lotus japonicus HOM05D000003 ORTHO05D000007 6.8e-08 61.6 88 35.2
Lj2g0006651 Lotus japonicus HOM05D000003 ORTHO05D000007 6.8e-08 61.6 63 42.9
Lj3g0003086 Lotus japonicus HOM05D000003 ORTHO05D000006 6.8e-08 61.6 56 50.0
Lj4g0024296 Lotus japonicus HOM05D000003 ORTHO05D000007 6.8e-08 61.6 56 50.0
TPR.G11139 Trifolium pratense HOM05D000003 ORTHO05D000007 6.8e-08 61.6 113 30.1
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-08 61.2 156 28.2
Sabra12G0054800 Salix brachista HOM05D000003 ORTHO05D000006 8.9e-08 61.2 29 93.1
TPR.G39739 Trifolium pratense HOM05D000003 ORTHO05D000007 8.9e-08 61.2 142 26.8
Oeu048451.1 Olea europaea HOM05D000003 ORTHO05D000007 1.2e-07 60.8 83 31.3
Gorai.003G070900 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.5e-07 60.5 87 33.3
QL02p083425 Quercus lobata HOM05D000003 ORTHO05D000007 1.5e-07 60.5 92 31.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.5e-07 60.5 78 32.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.5e-07 60.5 70 38.6
Lj3g0011245 Lotus japonicus HOM05D000003 ORTHO05D000007 2.0e-07 60.1 132 27.3
TPR.G12161 Trifolium pratense HOM05D008547 ORTHO05D010515 2.0e-07 60.1 120 33.3
TPR.G29398 Trifolium pratense HOM05D000003 ORTHO05D000007 2.0e-07 60.1 114 31.6
EL10Ac2g03868 Beta vulgaris HOM05D000003 ORTHO05D000007 2.6e-07 59.7 89 36.0
EL10Ac4g10100 Beta vulgaris HOM05D000003 ORTHO05D000007 2.6e-07 59.7 89 36.0
Lj2g0019281 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-07 59.7 70 37.1
Lj2g0027528 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-07 59.7 63 41.3
Lj6g0020901 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-07 59.7 63 42.9
Medtr1g054775 Medicago truncatula HOM05D000003 ORTHO05D000004 2.6e-07 59.7 128 30.5
TPR.G32099 Trifolium pratense HOM05D000003 ORTHO05D000007 2.6e-07 59.7 100 33.0
TPR.G35802 Trifolium pratense HOM05D000003 ORTHO05D000007 2.6e-07 59.7 71 33.8
EL10Ac6g13602 Beta vulgaris HOM05D000003 ORTHO05D000007 3.4e-07 59.3 89 32.6
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 3.4e-07 59.3 83 37.3
Eucgr.H03558 Eucalyptus grandis HOM05D000003 ORTHO05D000007 3.4e-07 59.3 71 38.0
Lj6g0007219 Lotus japonicus HOM05D000003 ORTHO05D000007 3.4e-07 59.3 87 35.6
TPR.G14601 Trifolium pratense HOM05D000003 ORTHO05D000007 3.4e-07 59.3 65 33.8
Lj4g0008475 Lotus japonicus HOM05D000003 ORTHO05D000007 4.4e-07 58.9 63 41.3
Peaxi162Scf00351g00517 Petunia axillaris HOM05D005774 ORTHO05D006516 4.4e-07 58.9 72 38.9
Prupe.1G231200 Prunus persica HOM05D000003 ORTHO05D000007 4.4e-07 58.9 51 49.0
QL02p017767 Quercus lobata HOM05D000003 ORTHO05D000007 4.4e-07 58.9 67 44.8
QL02p074972 Quercus lobata HOM05D000003 ORTHO05D000007 4.4e-07 58.9 107 29.9
QL06p037411 Quercus lobata HOM05D000003 ORTHO05D000007 4.4e-07 58.9 67 44.8
TPR.G27775 Trifolium pratense HOM05D000003 ORTHO05D000007 4.4e-07 58.9 77 33.8
Aa31sc194G20 Aethionema arabicum HOM05D000003 ORTHO05D000007 5.8e-07 58.5 118 30.5
Lj2g0018026 Lotus japonicus HOM05D000003 ORTHO05D000007 7.5e-07 58.2 63 39.7
Lj5g0014385 Lotus japonicus HOM05D000003 ORTHO05D000007 7.5e-07 58.2 77 35.1
Lj3g0003480 Lotus japonicus HOM05D000003 ORTHO05D000007 9.8e-07 57.8 63 38.1
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 9.8e-07 57.8 81 34.6
Psat7g116320 Pisum sativum HOM05D000003 ORTHO05D000007 1.3e-06 57.4 83 31.3
COL.COLO4_11918 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.7e-06 57.0 68 35.3
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 1.7e-06 57.0 70 35.7
QL02p053665 Quercus lobata HOM05D000003 ORTHO05D000007 1.7e-06 57.0 65 43.1
QL08p012347 Quercus lobata HOM05D000003 ORTHO05D000007 1.7e-06 57.0 80 33.8
TPR.G22548 Trifolium pratense HOM05D000003 ORTHO05D000007 2.2e-06 56.6 138 29.7
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 2.2e-06 56.6 123 26.0
EL10Ac4g07851 Beta vulgaris HOM05D000003 ORTHO05D000007 2.9e-06 56.2 122 28.7
Lj3g0024062 Lotus japonicus HOM05D000003 ORTHO05D000007 2.9e-06 56.2 76 32.9
Lj4g0014676 Lotus japonicus HOM05D000003 ORTHO05D000007 2.9e-06 56.2 63 39.7
Lj6g0024060 Lotus japonicus HOM05D021482 ORTHO05D000007 2.9e-06 56.2 56 37.5
QL06p011077 Quercus lobata HOM05D000003 ORTHO05D000007 2.9e-06 56.2 69 36.2
Peaxi162Scf00464g00213 Petunia axillaris HOM05D000003 ORTHO05D000007 3.7e-06 55.8 107 29.0
PGR004G0997 Punica granatum HOM05D000003 ORTHO05D000007 3.7e-06 55.8 46 52.2
Atru.chr1.1864 Acer truncatum HOM05D000003 ORTHO05D000007 4.9e-06 55.5 89 30.3
Cpa.g.sc83.58 Carica papaya HOM05D014810 ORTHO05D013058 4.9e-06 55.5 103 31.1
Lj3g0023340 Lotus japonicus HOM05D000003 ORTHO05D000007 4.9e-06 55.5 115 26.1
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 4.9e-06 55.5 63 39.7
LjContig00141g0004084 Lotus japonicus HOM05D013113 ORTHO05D000007 4.9e-06 55.5 57 35.1
Prupe.1G399000 Prunus persica HOM05D000003 ORTHO05D000007 4.9e-06 55.5 42 54.8
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 4.9e-06 55.5 148 26.4
QL05p086555 Quercus lobata HOM05D021827 ORTHO05D000007 4.9e-06 55.5 115 30.4
RcHm_v2.0_Chr7g0235221 Rosa chinensis HOM05D023274 ORTHO05D022700 4.9e-06 55.5 56 51.8
Sabra02G0002600 Salix brachista HOM05D000003 ORTHO05D000007 4.9e-06 55.5 31 87.1
AT2G01050 Arabidopsis thaliana HOM05D000003 ORTHO05D000007 6.4e-06 55.1 120 30.0
Lj5g0001706 Lotus japonicus HOM05D000003 ORTHO05D000007 6.4e-06 55.1 54 44.4
Lj6g0012583 Lotus japonicus HOM05D000003 ORTHO05D000007 6.4e-06 55.1 60 38.3
TPR.G14379 Trifolium pratense HOM05D000003 ORTHO05D000007 6.4e-06 55.1 117 28.2
TPR.G16044 Trifolium pratense HOM05D000003 ORTHO05D000007 6.4e-06 55.1 125 28.0
Lj1g0010773 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-06 54.7 52 44.2
Lj4g0010109 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-06 54.7 83 37.3
Lj4g0026510 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-06 54.7 115 26.1
Lj5g0016382 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-06 54.7 90 34.4
PSO339G4387 Papaver somniferum HOM05D000003 ORTHO05D000007 8.3e-06 54.7 116 27.6


User provided reference genes

Program Settings