Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.8e-229 798.9 396 100.0
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.0e-209 732.3 392 93.1
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 4.6e-193 677.9 397 85.1
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.2e-187 659.1 394 83.5
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.7e-176 622.9 388 78.6
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.6e-172 609.0 386 75.9
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.1e-169 599.4 376 78.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.7e-169 599.0 362 78.5
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 6.0e-169 597.8 392 75.0
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.0e-168 597.0 370 79.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.3e-168 596.7 384 75.3
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.3e-167 591.7 385 73.8
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 2.8e-166 589.0 393 74.3
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.8e-165 586.3 367 77.7
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.4e-165 585.9 367 77.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.9e-165 584.3 396 73.0
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.0e-165 583.9 367 77.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.0e-164 582.8 380 74.2
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.0e-164 582.8 384 74.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.4e-164 582.0 367 77.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.4e-164 582.0 343 81.6
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.3e-163 580.1 363 76.3
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.4e-162 575.9 381 74.5
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 5.4e-162 574.7 376 75.5
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.6e-161 573.2 399 71.2
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.6e-161 573.2 370 75.1
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.3e-160 570.1 369 75.1
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 6.7e-160 567.8 369 75.1
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 6.7e-160 567.8 362 74.3
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 8.7e-160 567.4 393 72.5
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.7e-160 567.4 362 75.4
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.1e-159 567.0 343 79.6
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.1e-159 567.0 364 75.3
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 3.3e-159 565.5 375 70.9
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 3.3e-159 565.5 408 69.9
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 5.6e-159 564.7 390 72.1
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.4e-159 564.3 369 74.5
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 7.4e-159 564.3 344 77.3
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 7.4e-159 564.3 370 72.2
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 9.6e-159 563.9 386 72.3
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-158 563.5 388 71.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-158 563.1 344 78.2
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.6e-158 563.1 390 71.8
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.6e-158 563.1 396 71.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 6.2e-158 561.2 348 77.6
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-157 560.5 359 71.6
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.4e-157 560.1 358 76.3
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.4e-157 559.3 378 74.1
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.4e-157 559.3 387 71.3
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.4e-157 559.3 387 71.3
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.1e-157 558.9 363 73.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 6.9e-157 557.8 387 70.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 9.0e-157 557.4 387 71.3
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 2.0e-156 556.2 390 72.1
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.8e-156 554.7 362 74.0
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 7.6e-156 554.3 379 72.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 7.6e-156 554.3 379 72.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.6e-156 554.3 340 76.5
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.8e-155 552.0 359 76.0
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 8.4e-155 550.8 352 75.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.4e-154 550.1 378 69.6
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.2e-154 548.9 389 69.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.2e-154 548.9 389 69.9
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 5.5e-154 548.1 370 72.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.2e-153 547.0 394 68.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.7e-153 545.8 362 72.9
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.7e-153 545.8 360 70.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-152 542.7 351 74.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.3e-152 542.7 366 71.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 5.1e-152 541.6 365 71.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 8.7e-152 540.8 364 71.4
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 9.6e-151 537.3 400 66.2
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 6.2e-150 534.6 380 67.9
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 8.2e-150 534.3 380 67.9
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 4.0e-149 531.9 397 65.2
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 6.9e-149 531.2 363 70.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.6e-148 529.3 362 70.4
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.6e-148 529.3 362 70.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.6e-148 529.3 361 70.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 5.8e-148 528.1 362 69.9
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.0e-147 527.3 377 67.4
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.7e-147 526.6 326 75.8
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-147 526.2 379 70.4
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.9e-147 525.0 391 65.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 6.5e-147 524.6 375 66.7
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 6.5e-147 524.6 388 66.2
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.5e-147 524.6 343 73.2
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 8.4e-147 524.2 391 67.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 8.4e-147 524.2 361 69.8
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.2e-146 521.9 390 64.6
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 5.5e-146 521.5 380 67.1
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 7.1e-146 521.2 362 69.9
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.2e-145 520.4 341 73.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.0e-144 517.3 343 72.9
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.3e-144 516.2 352 70.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 3.9e-144 515.4 384 67.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 5.1e-144 515.0 334 73.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.9e-143 513.1 352 70.7
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 7.4e-143 511.1 381 65.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.2e-142 509.6 351 70.4
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 8.2e-142 507.7 321 72.6
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.4e-141 506.9 371 66.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.3e-141 505.0 368 67.1
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.5e-140 503.4 391 64.2
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.9e-139 499.2 310 74.2
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 9.4e-138 494.2 366 66.7
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.2e-137 493.8 363 65.3
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.7e-137 492.7 339 68.4
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.6e-137 491.9 309 74.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 8.8e-136 487.6 343 68.2
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.7e-134 483.4 335 70.7
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.8e-134 482.6 343 67.9
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.7e-134 482.3 383 64.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-132 477.2 353 66.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 2.9e-131 472.6 371 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 4.4e-127 458.8 380 60.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 5.7e-127 458.4 373 61.4
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.5e-124 448.7 371 60.6
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.2e-123 446.4 319 69.0
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.5e-122 443.0 338 62.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.1e-121 439.9 359 61.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.6e-119 433.0 284 74.3
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.3e-118 430.6 357 57.4
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.2e-118 427.9 302 64.6
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.3e-115 420.6 231 83.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.0e-113 411.4 324 62.3
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.3e-110 404.1 324 59.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.2e-110 403.3 369 56.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.3e-110 401.4 304 66.8
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.5e-108 396.0 340 56.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 6.8e-104 381.7 314 61.1
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 5.0e-99 365.5 204 82.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.6e-97 359.4 204 82.8
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 7.0e-93 345.1 198 79.8
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 8.6e-91 338.2 236 72.0
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 3.1e-88 329.7 220 72.7
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.2e-85 319.7 178 84.3
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 4.3e-82 309.3 231 65.4
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.1e-80 304.7 276 55.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 4.7e-73 279.3 302 45.0
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 6.2e-73 278.9 397 37.3
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.0e-72 276.2 229 60.7
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.4e-69 267.7 343 40.5
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.9e-69 267.3 207 61.8
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 8.6e-67 258.5 221 58.8
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 6.2e-57 225.7 352 34.9
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.8e-54 216.5 198 56.6
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.4e-53 214.5 334 38.6
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.4e-45 186.0 136 69.1
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-31 141.0 116 62.1
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.8e-31 139.4 148 51.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.7e-30 137.9 108 63.0
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.0e-24 115.5 64 79.7
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.6e-20 104.8 57 82.5
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 5.0e-06 56.6 50 56.0


User provided reference genes

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