Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 0.0e+00 1325.1 628 100.0
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 6.0e-264 914.1 626 71.2
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 7.8e-264 913.7 624 71.8
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.1e-262 909.8 639 70.0
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.4e-259 898.3 626 70.1
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.1e-257 893.3 626 69.5
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 3.5e-256 888.3 626 70.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 7.9e-256 887.1 626 69.6
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.0e-255 886.7 625 68.8
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.4e-249 866.3 624 67.1
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 6.0e-248 860.9 628 70.1
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 7.9e-248 860.5 630 67.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-242 843.6 495 80.4
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 4.9e-242 841.3 629 66.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 2.1e-240 835.9 499 80.2
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 9.7e-238 827.0 629 66.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.8e-237 825.5 496 78.6
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.8e-237 824.7 496 78.8
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.2e-237 823.9 496 78.8
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-236 822.8 496 78.8
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.1e-236 822.0 496 79.2
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.0e-236 820.5 496 77.6
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.0e-235 819.3 496 77.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.5e-235 818.1 496 78.0
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.5e-235 818.1 495 78.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.3e-234 816.6 496 77.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.7e-234 816.2 594 68.5
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 5.0e-234 814.7 576 68.4
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.5e-234 814.3 494 78.1
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 6.5e-234 814.3 494 78.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 8.5e-234 813.9 496 78.2
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-233 813.5 496 77.2
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.1e-233 813.5 497 78.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.4e-233 813.1 499 77.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.6e-232 808.5 506 76.3
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.4e-231 806.6 496 77.4
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 3.0e-231 805.4 494 76.7
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 6.7e-231 804.3 497 77.7
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.1e-230 803.5 495 76.0
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.5e-230 803.1 496 77.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.9e-230 802.7 496 77.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.5e-230 802.4 495 76.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 3.3e-230 802.0 494 77.7
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.3e-230 802.0 497 77.5
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 3.3e-230 802.0 496 76.2
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 7.4e-230 800.8 499 76.8
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 9.7e-230 800.4 494 76.3
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.7e-229 799.7 496 77.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.7e-229 799.7 496 77.4
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.7e-229 799.7 495 77.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.7e-229 798.5 497 76.5
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 4.8e-229 798.1 496 76.6
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.4e-228 795.8 499 76.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 3.1e-228 795.4 496 76.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 9.1e-228 793.9 495 76.2
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 5.9e-227 791.2 496 76.0
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.3e-226 790.0 496 75.0
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-226 790.0 496 76.4
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.7e-226 789.6 496 75.2
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.9e-226 788.9 496 75.0
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 5.0e-226 788.1 496 75.0
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 6.5e-226 787.7 499 74.7
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 6.5e-226 787.7 499 74.7
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 6.5e-226 787.7 496 74.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 8.5e-226 787.3 497 75.5
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.1e-225 786.9 499 75.4
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.1e-225 786.9 495 75.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.4e-225 786.6 496 75.6
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 3.2e-225 785.4 496 74.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 5.5e-225 784.6 499 74.1
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 5.5e-225 784.6 499 74.7
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 5.5e-225 784.6 495 75.8
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 9.4e-225 783.9 495 75.8
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.2e-224 783.5 496 75.4
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.2e-224 783.5 496 74.6
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.6e-224 783.1 496 74.6
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.1e-224 782.7 496 75.8
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 3.6e-224 781.9 496 75.2
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.1e-224 781.2 499 74.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 6.1e-224 781.2 499 73.9
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.0e-223 780.4 499 73.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 3.0e-223 778.9 494 73.7
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 3.0e-223 778.9 496 74.8
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.0e-222 776.2 496 74.8
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.3e-222 775.4 497 75.9
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.3e-222 775.4 499 74.3
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 4.4e-222 775.0 494 74.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.7e-222 774.6 495 74.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 7.4e-222 774.2 522 71.5
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 7.4e-222 774.2 533 70.9
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 9.7e-222 773.9 499 73.5
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.7e-221 773.1 494 74.1
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.4e-220 770.0 496 75.6
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.8e-220 769.6 496 73.8
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 4.1e-220 768.5 495 74.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.1e-220 768.5 499 73.1
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 5.3e-220 768.1 495 74.3
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 5.3e-220 768.1 495 74.3
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.6e-219 765.8 495 73.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 4.5e-219 765.0 495 73.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 5.0e-218 761.5 405 85.4
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.5e-217 759.2 493 74.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.7e-216 755.7 499 72.5
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 6.7e-215 751.1 496 72.8
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 8.2e-213 744.2 494 70.4
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.4e-212 742.7 495 69.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 8.5e-210 734.2 496 71.0
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.5e-206 723.4 496 70.8
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.8e-199 699.9 492 66.9
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.0e-199 698.7 496 69.8
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.3e-197 693.7 434 76.5
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 8.3e-197 691.0 503 68.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 5.5e-193 678.3 380 80.3
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 7.2e-193 677.9 496 65.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 4.0e-191 672.2 497 65.2
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.2e-190 670.6 369 81.6
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.8e-190 667.5 507 66.1
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.0e-178 630.9 626 55.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.0e-175 619.0 495 63.4
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.6e-169 598.6 498 62.4
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.8e-168 596.3 385 75.6
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.4e-159 566.6 425 66.1
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.6e-152 542.7 351 75.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.5e-147 526.2 308 76.3
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.0e-147 525.4 349 73.6
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.5e-142 510.8 280 81.8
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.6e-123 447.6 510 51.2
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.6e-123 447.6 371 59.0
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.8e-119 434.1 287 67.9
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.7e-105 386.0 272 65.8
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 5.0e-85 319.7 191 74.9
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 7.0e-71 272.7 140 87.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.0e-70 271.2 213 63.4
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.9e-69 267.3 266 51.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.0e-65 254.6 145 74.5
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 3.4e-65 253.8 145 75.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 8.3e-64 249.2 146 77.4
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.5e-60 235.7 150 70.7
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-59 235.3 203 57.1
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 2.3e-58 231.1 249 52.6
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.7e-56 223.8 201 58.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.1e-53 213.4 135 76.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 4.7e-51 206.8 138 71.0
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.1e-42 179.1 109 75.2
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.4e-42 177.9 217 47.0
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.9e-39 168.3 164 56.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.2e-31 141.0 72 88.9
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-29 135.6 74 82.4
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.3e-28 130.6 78 78.2
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.3e-26 123.6 79 75.9
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.2e-25 122.5 82 68.3
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.9e-23 115.2 55 92.7
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.3e-23 112.8 70 72.9
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 5.6e-20 103.6 85 57.6
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 7.4e-20 103.2 68 67.6
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.6e-17 94.7 62 72.6
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.5e-15 88.2 71 60.6
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.0e-13 82.8 53 66.0
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.8e-13 82.0 67 52.2
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 6.7e-13 80.1 44 72.7
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 5.8e-09 67.0 168 28.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 2.9e-08 64.7 36 77.8
Sabra07G0047000 Salix brachista HOM05D004306 ORTHO05D005055 2.7e-06 58.2 67 47.8


User provided reference genes

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