Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 4.3e-37 157.5 82 100.0
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 2.8e-36 154.8 82 98.8
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 1.6e-28 129.0 83 85.5
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 4.0e-19 97.8 76 67.1
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 1.0e-17 93.2 69 68.1
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 1.7e-17 92.4 66 68.2
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 2.9e-17 91.7 81 63.0
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 8.4e-17 90.1 69 68.1
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 8.4e-17 90.1 55 74.5
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 1.1e-16 89.7 69 69.6
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 3.2e-16 88.2 81 61.7
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 4.2e-16 87.8 71 66.2
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 4.2e-16 87.8 68 67.6
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 9.3e-16 86.7 77 61.0
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 9.3e-16 86.7 74 60.8
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 9.3e-16 86.7 74 60.8
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 1.6e-15 85.9 87 59.8
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 1.6e-15 85.9 76 57.9
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 4.6e-15 84.3 77 63.6
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 4.6e-15 84.3 68 63.2
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 4.6e-15 84.3 74 59.5
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 7.9e-15 83.6 65 60.0
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 1.0e-14 83.2 77 58.4
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 1.0e-14 83.2 76 60.5
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 1.3e-14 82.8 79 53.2
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 1.8e-14 82.4 60 70.0
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 2.3e-14 82.0 60 68.3
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.3e-14 82.0 63 68.3
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.3e-14 82.0 63 68.3
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 2.3e-14 82.0 84 59.5
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 2.3e-14 82.0 71 63.4
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 3.0e-14 81.6 67 58.2
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 3.0e-14 81.6 77 58.4
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 3.9e-14 81.3 77 63.6
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 6.7e-14 80.5 83 56.6
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 8.7e-14 80.1 56 64.3
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 8.7e-14 80.1 81 55.6
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 8.7e-14 80.1 69 59.4
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 1.1e-13 79.7 62 62.9
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 1.5e-13 79.3 51 70.6
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 1.5e-13 79.3 51 70.6
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 1.5e-13 79.3 51 70.6
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 1.9e-13 79.0 51 68.6
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 1.9e-13 79.0 51 68.6
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 2.5e-13 78.6 64 60.9
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 2.5e-13 78.6 64 60.9
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 2.5e-13 78.6 58 63.8
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 2.5e-13 78.6 58 63.8
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 2.5e-13 78.6 72 56.9
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 2.5e-13 78.6 70 57.1
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 2.5e-13 78.6 58 69.0
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 2.5e-13 78.6 77 54.5
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 3.3e-13 78.2 67 55.2
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 4.3e-13 77.8 58 62.1
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 4.3e-13 77.8 80 58.8
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 4.3e-13 77.8 70 60.0
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 4.3e-13 77.8 58 62.1
Nitab4.5_0007941g0020 Nicotiana tabacum HOM05D005680 ORTHO05D006334 5.7e-13 77.4 66 60.6
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 5.7e-13 77.4 75 57.3
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 7.4e-13 77.0 58 69.0
COL.COLO4_17729 Corchorus olitorius HOM05D005680 ORTHO05D006334 7.4e-13 77.0 53 71.7
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 7.4e-13 77.0 72 52.8
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 9.6e-13 76.6 55 63.6
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 9.6e-13 76.6 66 59.1
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 1.6e-12 75.9 58 60.3
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 1.6e-12 75.9 51 72.5
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 1.6e-12 75.9 58 60.3
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 2.1e-12 75.5 63 57.1
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 2.1e-12 75.5 58 60.3
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 2.1e-12 75.5 70 57.1
Cpa.g.sc6.54 Carica papaya HOM05D005680 ORTHO05D006334 2.8e-12 75.1 67 61.2
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 2.8e-12 75.1 79 59.5
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 3.7e-12 74.7 67 62.7
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 3.7e-12 74.7 67 53.7
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 4.8e-12 74.3 71 56.3
Thecc.02G019100 Theobroma cacao HOM05D005680 ORTHO05D006334 4.8e-12 74.3 73 58.9
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 6.2e-12 73.9 73 56.2
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 8.2e-12 73.6 77 51.9
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 1.4e-11 72.8 63 57.1
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 1.8e-11 72.4 57 68.4
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 2.4e-11 72.0 68 54.4
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 2.4e-11 72.0 67 53.7
Nitab4.5_0003878g0080 Nicotiana tabacum HOM05D005680 ORTHO05D006334 3.1e-11 71.6 65 56.9
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 4.0e-11 71.2 58 65.5
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 6.9e-11 70.5 77 50.6
DCAR_003112 Daucus carota HOM05D005680 ORTHO05D006334 6.9e-11 70.5 61 60.7
Sed0000508 Sechium edule HOM05D005680 ORTHO05D006334 6.9e-11 70.5 72 55.6
Duzib052G1168 Durio zibethinus HOM05D005680 ORTHO05D006334 1.2e-10 69.7 77 51.9
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.2e-10 69.7 58 58.6
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 1.2e-10 69.7 71 54.9
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 1.5e-10 69.3 64 53.1
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 2.0e-10 68.9 71 54.9
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 3.4e-10 68.2 53 60.4
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 3.4e-10 68.2 75 54.7
ECA246G0256 Erigeron canadensis HOM05D005680 ORTHO05D006334 3.4e-10 68.2 63 57.1
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 5.8e-10 67.4 44 70.5
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 7.6e-10 67.0 81 51.9
ATR0030G059 Amborella trichopoda HOM05D005680 ORTHO05D006334 1.0e-09 66.6 61 59.0
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 1.7e-09 65.9 81 51.9
CsaV3_4G037560 Cucumis sativus L. HOM05D005680 ORTHO05D006334 2.2e-09 65.5 75 53.3
CDE04G1110 Ceratophyllum demersum HOM05D005680 ORTHO05D006334 2.9e-09 65.1 70 48.6
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 2.9e-09 65.1 66 50.0
Gohir.A04G133600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.9e-09 65.1 50 60.0
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.5e-09 63.9 65 50.8
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 8.4e-09 63.5 66 50.0
Nitab4.5_0000419g0130 Nicotiana tabacum HOM05D005680 ORTHO05D006334 8.4e-09 63.5 63 52.4
ATR0605G143 Amborella trichopoda HOM05D005680 ORTHO05D006334 1.4e-08 62.8 61 54.1
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 1.4e-08 62.8 64 50.0
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 1.4e-08 62.8 71 53.5
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 1.4e-08 62.8 62 53.2
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.9e-08 62.4 46 58.7
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.9e-08 62.4 46 58.7
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 2.5e-08 62.0 65 49.2
SalBow1G8512 Salvia bowleyana HOM05D005680 ORTHO05D006334 4.2e-08 61.2 67 50.7
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 7.1e-08 60.5 65 47.7
Aa31LG7G13780 Aethionema arabicum HOM05D005680 ORTHO05D006334 1.2e-07 59.7 42 66.7
Gohir.D04G176700 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.6e-07 59.3 78 47.4
AT2G23120 Arabidopsis thaliana HOM05D013772 ORTHO05D006334 2.1e-07 58.9 45 64.4
Gorai.012G169600 Gossypium raimondii HOM05D005680 ORTHO05D006334 2.1e-07 58.9 78 46.2
Lalb_Chr23g0265551 Lupinus albus HOM05D005680 ORTHO05D006334 2.1e-07 58.9 68 50.0
SHI12592 Sapria himalayana HOM05D005680 ORTHO05D006334 2.1e-07 58.9 71 47.9
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 2.7e-07 58.5 78 48.7
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 6.1e-07 57.4 45 62.2
Cfa014129 Carpinus fangiana HOM05D005680 ORTHO05D006334 6.1e-07 57.4 64 46.9
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 1.8e-06 55.8 66 45.5
AL4G12960 Arabidopsis lyrata HOM05D013772 ORTHO05D006334 8.7e-06 53.5 68 44.1
COL.COLO4_12038 Corchorus olitorius HOM05D005680 ORTHO05D006334 8.7e-06 53.5 55 54.5


User provided reference genes

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