Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 1.3e-303 1045.8 615 100.0
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 2.9e-218 762.3 622 74.8
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 6.7e-143 511.9 626 59.4
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 1.1e-142 511.1 546 65.4
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 2.2e-141 506.9 604 49.5
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 1.6e-139 500.7 622 55.6
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 3.8e-138 496.1 626 56.5
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 3.6e-136 489.6 567 60.7
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.5e-121 441.0 592 56.2
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 1.2e-120 438.0 552 51.4
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 6.1e-120 435.6 595 51.4
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 1.4e-119 434.5 588 56.6
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 1.4e-119 434.5 595 52.1
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 4.0e-119 433.0 585 51.3
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 5.2e-119 432.6 561 50.3
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 8.9e-119 431.8 615 54.1
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 9.8e-118 428.3 550 51.1
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 1.7e-117 427.6 610 50.5
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 4.9e-117 426.0 594 50.8
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 1.1e-116 424.9 587 50.4
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 3.1e-116 423.3 594 50.0
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 7.0e-116 422.2 569 52.2
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 1.2e-115 421.4 585 50.6
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 4.5e-115 419.5 613 49.4
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 1.3e-114 417.9 600 50.7
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 3.8e-114 416.4 548 52.6
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 8.6e-114 415.2 583 49.7
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 3.3e-113 413.3 609 49.4
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 1.5e-110 404.4 591 49.4
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 2.9e-109 400.2 573 50.4
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 8.3e-109 398.7 604 47.0
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 8.3e-109 398.7 616 47.7
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 2.4e-108 397.1 561 48.8
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 3.2e-108 396.7 561 48.8
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 1.2e-107 394.8 551 50.8
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 2.0e-107 394.0 592 47.5
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 3.5e-107 393.3 604 46.7
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 4.6e-107 392.9 604 46.7
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 4.6e-107 392.9 586 47.1
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 1.3e-106 391.3 601 46.6
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 1.3e-106 391.3 586 46.4
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 3.0e-106 390.2 591 47.4
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.9e-105 387.5 586 48.8
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 2.5e-105 387.1 600 47.2
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 1.6e-104 384.4 594 47.3
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 3.6e-104 383.3 594 46.3
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 3.6e-104 383.3 584 47.6
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 6.8e-103 379.0 603 46.1
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 9.8e-102 375.2 582 46.6
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 8.3e-101 372.1 602 44.9
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 1.9e-100 370.9 601 45.4
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.4e-100 370.5 556 49.3
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 2.7e-99 367.1 555 48.6
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 3.9e-98 363.2 582 45.7
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 1.1e-97 361.7 566 48.4
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 9.5e-97 358.6 595 44.7
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 9.5e-97 358.6 572 51.0
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 1.1e-92 345.1 558 46.6
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 1.4e-92 344.7 616 45.0
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 1.3e-90 338.2 510 45.1
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 5.1e-90 336.3 627 41.9
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 5.1e-90 336.3 568 46.1
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 1.9e-89 334.3 591 44.2
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 2.5e-89 334.0 589 45.0
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 4.3e-89 333.2 591 45.3
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.1e-88 330.9 546 45.4
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 6.2e-88 329.3 591 43.8
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 6.2e-88 329.3 584 44.9
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 3.1e-87 327.0 583 44.1
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 6.8e-87 325.9 593 44.4
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 6.8e-87 325.9 334 52.7
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 7.1e-84 315.8 324 52.2
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 6.0e-83 312.8 510 48.2
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 7.8e-83 312.4 535 44.9
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 5.6e-81 306.2 305 52.8
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 1.6e-80 304.7 314 51.3
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 6.2e-80 302.8 600 42.0
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 2.2e-77 294.3 552 45.8
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 3.8e-77 293.5 600 41.2
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 1.9e-73 281.2 559 43.6
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 4.3e-73 280.0 314 48.7
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 4.8e-72 276.6 579 42.0
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 6.7e-66 256.1 421 39.4
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 5.3e-63 246.5 251 53.8
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 6.0e-59 233.0 278 44.6
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 7.4e-57 226.1 427 46.1
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 3.1e-55 220.7 451 34.8
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 7.1e-52 209.5 218 47.2
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 1.1e-49 202.2 253 47.0
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 4.3e-49 200.3 548 32.3
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.0e-45 189.1 568 30.3
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 4.5e-38 163.7 106 70.8
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 3.2e-36 157.5 105 64.8
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.2e-35 155.6 120 60.8
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 6.7e-34 149.8 167 45.5
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 2.4e-31 141.4 91 64.8
Atru.chr3.508 Acer truncatum HOM05D007242 ORTHO05D009089 1.6e-27 128.6 96 69.8
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 8.2e-24 116.3 111 51.4
Atru.chr3.509 Acer truncatum HOM05D007242 ORTHO05D009089 1.7e-21 108.6 70 72.9
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 8.5e-21 106.3 121 46.3
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 8.0e-19 99.8 105 50.5
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 1.4e-18 99.0 161 42.2
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 3.4e-17 94.4 187 34.8
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 1.6e-14 85.5 96 42.7
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 2.7e-11 74.7 94 46.8
CsaV3_1G002080 Cucumis sativus L. HOM05D004079 ORTHO05D005437 2.2e-08 65.1 153 32.7
MELO3C017149.2 Cucumis melo HOM05D004079 ORTHO05D005437 1.1e-07 62.8 153 32.0
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 1.1e-07 62.8 96 39.6
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 1.4e-07 62.4 101 34.7
ClCG06G016440 Citrullus lanatus HOM05D004079 ORTHO05D005437 1.8e-07 62.0 143 32.2
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 4.1e-07 60.8 123 30.9
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 2.0e-06 58.5 86 38.4
ATR0006G044 Amborella trichopoda HOM05D004079 ORTHO05D009709 2.7e-06 58.2 90 33.3
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 3.5e-06 57.8 101 32.7
Sed0004776 Sechium edule HOM05D004079 ORTHO05D005437 3.5e-06 57.8 101 34.7
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 4.5e-06 57.4 101 32.7
AagrBONN_evm.TU.Sc2ySwM_369.153 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 57.4 331 24.5
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 4.5e-06 57.4 86 38.4
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 7.7e-06 56.6 133 29.3
Nn4g23007 Nelumbo nucifera HOM05D004079 ORTHO05D005437 7.7e-06 56.6 131 31.3


User provided reference genes

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