Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.5e-94 349.7 208 100.0
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.7e-34 150.2 250 42.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.9e-29 132.9 234 38.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.3e-25 119.4 255 35.7
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.2e-24 117.5 231 35.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.5e-22 110.5 76 68.4
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 4.4e-22 109.0 53 98.1
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 5.8e-22 108.6 76 63.2
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-21 106.7 76 61.8
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.9e-21 106.3 74 67.6
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 3.8e-21 105.9 74 63.5
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.8e-21 105.9 74 66.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 6.4e-21 105.1 107 49.5
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 8.4e-21 104.8 74 62.2
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.1e-20 104.4 76 60.5
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.1e-20 104.4 76 60.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.9e-20 103.6 76 64.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.9e-20 103.6 76 64.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.9e-20 103.6 74 60.8
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.4e-20 103.2 74 60.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.4e-20 103.2 107 48.6
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 3.2e-20 102.8 74 59.5
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.2e-20 102.8 74 58.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 5.4e-20 102.1 74 60.8
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 5.4e-20 102.1 74 60.8
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 5.4e-20 102.1 74 62.2
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 7.1e-20 101.7 74 60.8
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-19 100.9 74 59.5
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.6e-19 100.5 74 60.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.6e-19 100.5 74 60.8
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.1e-19 100.1 76 53.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.7e-19 99.8 74 56.8
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 4.6e-19 99.0 74 56.8
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 6.0e-19 98.6 74 56.8
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 7.8e-19 98.2 74 54.1
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.7e-18 97.1 74 58.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.7e-18 97.1 74 56.8
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.7e-18 97.1 76 56.6
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.7e-18 97.1 74 52.7
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.7e-18 97.1 76 59.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 2.3e-18 96.7 76 55.3
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 3.0e-18 96.3 76 55.3
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.9e-18 95.9 74 59.5
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.1e-18 95.5 74 56.8
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 5.1e-18 95.5 76 57.9
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.1e-18 95.5 76 57.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 6.6e-18 95.1 74 54.1
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 8.7e-18 94.7 74 55.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 8.7e-18 94.7 74 55.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 8.7e-18 94.7 76 56.6
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 8.7e-18 94.7 74 56.8
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.1e-17 94.4 74 54.1
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-17 94.4 110 43.6
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.5e-17 94.0 76 56.6
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.9e-17 93.6 74 56.8
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.5e-17 93.2 76 56.6
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 3.3e-17 92.8 73 53.4
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.3e-17 92.4 110 42.7
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.3e-17 92.4 74 56.8
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 4.3e-17 92.4 74 54.1
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.3e-17 91.7 74 56.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.3e-16 90.9 74 54.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.3e-16 90.9 110 42.7
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.3e-16 90.9 110 42.7
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.6e-16 90.5 71 59.2
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-16 90.1 74 48.6
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-16 90.1 74 48.6
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.1e-16 90.1 110 42.7
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.1e-16 90.1 57 68.4
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-16 90.1 74 55.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.8e-16 89.7 74 55.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.8e-16 89.7 71 56.3
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.8e-16 89.7 74 54.1
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.6e-16 89.4 74 55.4
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.6e-16 89.4 110 42.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 3.6e-16 89.4 74 51.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 4.8e-16 89.0 74 52.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 8.1e-16 88.2 74 54.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.4e-15 87.4 69 55.1
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.4e-15 87.4 74 54.1
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.4e-15 87.4 74 54.1
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.4e-15 87.4 76 55.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.8e-15 87.0 74 51.4
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.4e-15 86.7 74 52.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.4e-15 86.7 76 47.4
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.1e-15 86.3 73 54.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.1e-15 86.3 69 53.6
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.1e-15 86.3 66 59.1
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 3.1e-15 86.3 74 52.7
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.0e-15 85.9 69 53.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 4.0e-15 85.9 69 52.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 4.0e-15 85.9 69 52.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 4.0e-15 85.9 69 52.2
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.0e-15 85.9 69 52.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.0e-15 85.9 74 54.1
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 4.0e-15 85.9 76 53.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 4.0e-15 85.9 69 53.6
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.0e-15 85.9 74 51.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 6.9e-15 85.1 69 52.2
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.9e-15 85.1 69 52.2
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 9.0e-15 84.7 69 52.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 9.0e-15 84.7 74 51.4
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 9.0e-15 84.7 74 50.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-14 84.0 74 48.6
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.0e-14 83.6 74 50.0
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.6e-14 83.2 74 48.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.3e-13 80.9 69 49.3
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.2e-13 80.1 73 53.4
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.9e-13 79.7 74 45.9
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.8e-13 79.3 74 45.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.2e-12 76.3 74 43.2
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 4.2e-12 75.9 74 48.6
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.7e-11 73.2 70 51.4
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.6e-11 72.4 65 47.7
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.0e-10 71.2 74 39.2
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.9e-10 69.3 57 56.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 3.9e-10 69.3 76 40.8
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.7e-10 68.6 74 43.2
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 2.5e-09 66.6 62 50.0
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 4.0e-07 59.3 74 39.2
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 5.3e-07 58.9 70 37.1


User provided reference genes

Program Settings