Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 2.1e-192 675.6 370 100.0
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.4e-158 562.0 376 87.2
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 4.4e-105 385.6 375 67.5
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 2.8e-104 382.9 386 64.8
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.7e-96 355.9 388 60.8
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 7.0e-95 351.7 386 58.8
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 9.1e-95 351.3 385 60.0
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.0e-94 350.1 381 59.3
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 5.9e-94 348.6 377 63.9
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.3e-93 346.7 383 59.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.9e-93 346.3 377 59.9
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.5e-92 344.0 398 57.5
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.9e-92 343.6 381 61.2
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.9e-92 343.6 351 65.0
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.2e-92 342.4 399 56.9
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 7.2e-92 341.7 391 58.1
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 3.6e-91 339.3 384 61.5
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.3e-90 336.7 385 62.1
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 5.2e-90 335.5 398 63.1
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 3.7e-88 329.3 387 56.8
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 4.9e-88 328.9 386 58.0
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 6.4e-88 328.6 386 57.8
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.3e-88 328.2 374 60.2
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.2e-87 326.2 378 58.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 4.1e-87 325.9 403 58.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.6e-86 323.9 390 59.2
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.8e-86 321.6 386 58.8
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.0e-85 321.2 411 57.2
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.3e-85 320.9 386 58.0
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.7e-85 320.5 379 56.5
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 2.5e-84 316.6 386 56.2
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 3.3e-84 316.2 395 57.0
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.3e-84 315.8 387 55.0
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 5.6e-84 315.5 391 56.8
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.6e-84 315.5 386 59.1
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.6e-84 315.5 373 58.4
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.2e-83 314.3 383 56.7
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.1e-83 313.5 376 56.9
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.7e-83 312.4 377 54.6
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 6.2e-83 312.0 382 57.6
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.0e-83 311.6 381 57.2
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 6.8e-82 308.5 387 56.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.8e-82 308.5 373 55.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 7.5e-81 305.1 384 53.6
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 9.8e-81 304.7 401 56.9
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.3e-80 304.3 331 62.5
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.9e-80 303.1 385 54.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.7e-80 302.8 380 55.3
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 4.9e-80 302.4 375 54.9
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.1e-79 301.2 384 56.0
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.4e-79 300.8 385 55.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 3.2e-79 299.7 386 54.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.6e-78 297.4 381 56.4
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.7e-77 293.9 383 59.0
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 3.0e-77 293.1 378 56.6
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.0e-77 293.1 387 51.9
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.6e-77 291.6 395 50.9
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 5.6e-76 288.9 396 54.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 9.5e-76 288.1 384 55.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-75 287.3 381 51.2
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 2.1e-75 287.0 378 52.6
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 3.6e-75 286.2 386 51.8
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 4.7e-75 285.8 383 57.7
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.4e-74 284.3 364 55.2
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 6.8e-74 282.0 403 50.4
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.5e-73 280.8 392 51.5
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.8e-73 278.9 388 50.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.2e-72 276.9 388 51.5
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 3.7e-72 276.2 390 51.8
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.1e-71 274.6 378 55.3
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.4e-71 274.2 379 55.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.4e-71 273.5 393 49.4
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.2e-71 273.1 377 49.1
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.1e-71 271.9 378 49.5
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.6e-70 269.2 384 53.9
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.6e-70 269.2 386 54.7
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.8e-70 268.5 384 52.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.8e-70 268.5 385 50.9
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.3e-69 266.9 384 51.8
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.3e-69 266.9 384 51.0
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 3.0e-69 266.5 381 52.5
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 5.1e-69 265.8 376 52.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.5e-68 264.2 371 49.1
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.3e-68 263.1 336 53.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 4.3e-68 262.7 373 50.4
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.3e-68 261.9 385 50.4
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.3e-68 261.9 373 53.9
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.1e-67 260.4 358 51.4
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.7e-67 259.2 376 49.7
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 4.7e-67 259.2 349 53.6
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.1e-66 256.5 357 51.0
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.8e-66 255.4 449 45.0
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 8.9e-66 255.0 376 52.9
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.3e-64 251.1 355 51.3
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 2.2e-64 250.4 376 51.3
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 4.9e-64 249.2 379 48.0
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.9e-64 249.2 449 44.5
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.1e-63 248.1 376 48.1
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 5.4e-63 245.7 375 49.9
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 9.2e-63 245.0 376 51.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 6.0e-62 242.3 345 53.6
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.3e-61 240.4 375 50.7
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 2.3e-61 240.4 377 47.7
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 8.6e-61 238.4 376 48.7
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-59 234.6 457 43.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.6e-59 234.2 377 46.9
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 2.1e-59 233.8 262 57.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 8.1e-59 231.9 379 49.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.8e-58 230.7 334 51.2
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 8.9e-58 228.4 294 53.1
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.2e-57 228.0 378 46.6
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-57 227.6 334 50.3
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.6e-57 226.9 382 45.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.4e-55 221.1 391 45.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.1e-54 217.2 183 71.6
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.0e-53 214.9 377 42.4
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.5e-52 210.3 397 40.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.3e-52 209.9 378 43.4
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.3e-51 208.0 343 44.9
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 6.2e-51 205.7 381 40.4
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 8.1e-51 205.3 384 45.3
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.1e-50 203.4 371 44.7
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 5.3e-50 202.6 368 48.1
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 6.4e-48 195.7 374 41.7
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.2e-47 193.0 347 43.8
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 5.4e-47 192.6 386 42.7
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.0e-45 188.3 343 41.4
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.0e-45 186.8 227 57.3
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 8.7e-45 185.3 346 42.8
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.1e-44 184.9 375 39.7
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.1e-44 184.9 385 40.3
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.3e-43 181.4 384 40.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.1e-43 180.6 360 39.7
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.8e-42 177.6 322 42.2
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 4.0e-42 176.4 335 38.8
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 9.0e-42 175.3 341 40.2
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 2.0e-41 174.1 344 40.7
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 4.5e-41 172.9 270 48.5
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.2e-40 170.6 363 40.5
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 3.8e-40 169.9 355 44.2
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.3e-37 161.4 403 37.0
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.1e-36 158.3 264 44.3
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.5e-36 157.9 297 40.1
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 7.4e-36 155.6 212 52.4
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 9.6e-36 155.2 261 46.4
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.4e-34 151.4 367 35.1
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 3.1e-34 150.2 391 35.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.1e-34 150.2 397 35.0
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 9.0e-34 148.7 369 40.4
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 2.0e-33 147.5 218 51.4
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.0e-33 147.5 223 49.8
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.0e-33 147.5 223 49.8
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.6e-33 147.1 228 50.9
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.6e-33 147.1 228 50.9
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.4e-33 146.7 215 53.0
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.0e-32 145.2 375 35.2
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.2e-32 144.1 222 46.4
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 7.1e-31 139.0 133 67.7
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.0e-29 135.2 294 39.5
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.9e-28 131.0 361 34.9
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 9.6e-28 128.6 140 61.4
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.2e-27 125.6 342 36.5
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-25 121.3 210 45.2
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.0e-25 120.9 172 50.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.3e-24 118.2 172 49.4
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 6.5e-24 115.9 353 36.8
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.1e-20 105.1 327 38.5
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.1e-20 105.1 327 38.5
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 2.8e-19 100.5 255 32.5
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.5e-15 87.4 355 34.4
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.6e-14 84.7 297 30.3
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 8.8e-13 79.0 442 28.3
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.0e-12 77.8 59 67.8
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.3e-12 76.6 59 66.1
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 2.2e-11 74.3 71 52.1
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 1.0e-08 65.5 337 27.6
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-07 62.0 137 40.1
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.9e-07 61.2 126 38.1
Atru.chr1.3639 Acer truncatum HOM05D003676 ORTHO05D004262 9.4e-07 58.9 63 57.1


User provided reference genes

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