Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 0.0e+00 1115.5 710 100.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 7.2e-290 1000.3 708 91.4
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 1.8e-203 713.4 693 62.3
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.3e-201 707.2 723 65.0
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.3e-201 707.2 723 65.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.4e-200 703.7 704 67.2
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 5.9e-199 698.4 726 65.4
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.1e-196 688.3 722 64.5
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 3.0e-195 686.0 704 64.6
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.4e-192 677.2 703 59.5
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.7e-188 662.9 691 59.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 8.8e-187 657.9 696 63.5
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.2e-183 647.5 710 62.0
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.9e-183 645.2 704 63.9
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.0e-182 644.4 703 63.9
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 2.2e-182 643.3 710 61.1
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.5e-181 639.8 702 59.7
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.3e-179 633.3 708 65.4
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 8.8e-179 631.3 705 64.5
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.1e-176 624.4 692 64.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 3.1e-176 622.9 710 57.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.6e-175 620.5 721 65.7
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.3e-174 617.5 715 58.0
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.2e-174 616.7 703 65.1
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.1e-173 614.4 719 61.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 4.2e-173 612.5 684 56.3
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 5.5e-173 612.1 719 59.9
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.8e-171 607.1 710 64.4
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 3.0e-171 606.3 713 59.5
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 6.7e-171 605.1 712 67.0
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.0e-170 603.6 710 63.1
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 3.3e-170 602.8 697 57.2
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.3e-169 600.9 713 62.4
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 9.1e-168 594.7 689 62.3
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 2.0e-167 593.6 656 66.8
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.7e-167 593.2 698 61.0
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.3e-166 590.9 708 55.9
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 5.0e-166 589.0 742 58.5
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 8.5e-166 588.2 539 63.8
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.2e-165 586.3 685 58.7
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 3.2e-165 586.3 698 60.3
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 2.1e-164 583.6 695 60.1
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 5.4e-160 568.9 695 60.3
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 5.4e-160 568.9 705 63.5
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 5.9e-159 565.5 722 58.4
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.3e-158 563.5 709 56.7
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.0e-155 552.7 701 57.8
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 6.8e-155 552.0 715 55.0
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.3e-153 547.7 641 62.6
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 4.9e-153 545.8 727 56.9
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 8.3e-153 545.0 708 54.2
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.4e-152 542.3 695 60.0
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.6e-151 540.8 698 60.9
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.7e-151 540.0 526 60.3
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 7.8e-151 538.5 706 52.3
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 1.5e-149 534.3 723 54.1
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.5e-149 533.5 714 51.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 7.3e-149 531.9 718 54.3
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 2.1e-148 530.4 713 55.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.8e-148 530.0 708 54.0
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.8e-148 530.0 701 58.8
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 6.1e-148 528.9 705 57.4
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 2.3e-147 526.9 701 53.8
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 9.8e-146 521.5 762 51.8
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 2.4e-144 516.9 708 55.6
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.4e-144 516.9 699 53.8
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.6e-143 514.2 699 55.7
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 3.5e-143 513.1 736 53.4
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 4.6e-143 512.7 704 56.5
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 4.4e-138 496.1 696 53.2
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.3e-137 494.6 574 57.5
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 2.2e-137 493.8 716 52.4
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 7.0e-136 488.8 738 50.7
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.7e-134 484.2 654 55.2
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.1e-132 477.2 723 49.4
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.4e-131 474.6 515 55.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 6.8e-131 472.2 534 55.6
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.9e-129 466.8 710 51.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 6.0e-127 459.1 735 55.4
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 6.0e-127 459.1 710 52.7
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 8.6e-126 455.3 430 68.4
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.8e-123 447.6 700 53.1
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 6.8e-123 445.7 530 56.0
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 6.4e-121 439.1 729 51.0
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 9.2e-120 435.3 713 54.6
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.2e-119 434.9 540 52.2
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 8.7e-118 428.7 325 74.5
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 4.3e-117 426.4 607 46.5
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.2e-116 424.9 725 52.3
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 6.9e-115 419.1 526 52.5
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.0e-114 417.5 716 51.3
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 4.4e-114 416.4 716 51.5
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 4.2e-112 409.8 712 52.1
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.7e-111 407.1 715 47.0
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 2.3e-110 404.1 698 52.1
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.0e-110 403.7 711 52.6
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.5e-109 400.6 714 53.2
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 4.5e-106 389.8 386 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.8e-106 389.4 735 43.1
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.8e-100 369.8 715 46.3
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 9.0e-99 365.5 701 45.2
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.1e-95 354.4 390 60.8
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.8e-94 351.3 736 40.4
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 4.8e-92 343.2 728 45.3
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.8e-92 343.2 636 41.8
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 3.5e-87 327.0 625 39.7
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 6.3e-84 316.2 559 42.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 6.1e-79 299.7 345 66.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 5.3e-75 286.6 232 71.1
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 9.1e-75 285.8 501 43.3
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 2.1e-71 274.6 579 37.5
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.3e-60 238.8 200 57.5
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 9.1e-59 232.6 298 54.0
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.3e-57 228.8 719 31.7
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.5e-56 224.6 196 59.7
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.3e-54 218.0 271 60.5
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.4e-51 208.8 531 34.5
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-51 208.4 276 50.7
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.5e-48 198.0 582 32.5
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 3.0e-46 191.0 267 53.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.6e-42 178.7 408 34.3
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 9.5e-40 169.5 199 47.7
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.5e-37 162.2 851 29.5
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.1e-35 154.5 246 44.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 1.5e-29 135.6 299 42.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 2.0e-29 135.2 120 63.3
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.2e-28 131.7 101 72.3
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.9e-27 128.6 111 55.9
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 5.0e-25 120.6 129 55.8
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 3.3e-24 117.9 191 44.0
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 2.9e-20 104.8 282 31.2
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-19 102.4 99 47.5
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-19 102.1 81 63.0
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 7.0e-19 100.1 87 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 9.2e-19 99.8 318 30.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 2.7e-18 98.2 175 43.4
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.5e-18 97.8 205 44.4
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.7e-17 95.5 76 55.3
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.5e-16 92.4 164 39.6
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 2.1e-15 88.6 79 55.7
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.4e-13 81.3 103 52.4
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 5.8e-13 80.5 72 55.6
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 6.4e-12 77.0 60 65.0
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.7e-10 71.6 75 46.7
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.5e-08 65.9 48 56.2
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.5e-08 65.9 68 51.5
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 2.8e-07 61.6 87 48.3
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 1.1e-06 59.7 87 47.1
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 1.1e-06 59.7 50 52.0
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 8.9e-06 56.6 33 69.7


User provided reference genes

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