Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 0.0e+00 1157.5 788 100.0
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.1e-304 1049.7 792 92.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 5.5e-222 775.0 801 67.0
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 2.2e-207 726.5 793 64.7
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.2e-199 699.9 836 60.9
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 7.2e-198 694.9 811 61.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.6e-197 693.7 799 64.2
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 7.9e-197 691.4 804 65.5
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 3.0e-196 689.5 802 66.2
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 8.2e-194 681.4 767 59.7
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 2.9e-191 672.9 802 59.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.8e-191 672.5 793 63.4
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 6.5e-191 671.8 802 63.1
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.6e-189 667.2 804 63.4
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.6e-189 666.0 738 64.0
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 6.7e-188 661.8 805 61.6
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.4e-187 659.1 759 61.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 2.8e-186 656.4 803 61.8
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 8.2e-186 654.8 801 56.4
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 4.1e-185 652.5 803 61.6
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.0e-184 650.2 738 65.0
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.0e-184 650.2 738 64.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 3.6e-181 639.4 809 61.2
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.6e-181 639.4 804 65.3
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.7e-181 639.0 802 62.6
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 6.1e-181 638.6 790 62.2
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 3.0e-180 636.3 785 65.6
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 6.8e-180 635.2 785 65.6
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.2e-179 634.4 797 59.2
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 4.4e-179 632.5 802 61.7
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.7e-178 630.6 797 63.5
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.1e-177 625.9 793 58.1
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 9.1e-177 624.8 805 61.9
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.0e-176 623.6 798 63.3
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.6e-173 612.8 512 69.3
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 5.2e-172 609.0 801 57.2
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 9.8e-171 604.7 764 59.6
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 2.8e-170 603.2 762 60.2
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.8e-170 603.2 796 57.8
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.1e-169 601.3 797 57.6
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.4e-169 600.9 799 58.7
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.8e-169 600.5 799 56.7
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 2.4e-169 600.1 794 53.9
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 7.7e-168 595.1 791 59.7
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.5e-166 590.1 763 62.0
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 4.3e-166 589.3 813 57.6
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 7.3e-166 588.6 793 56.9
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 5.7e-163 578.9 786 57.9
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.4e-161 574.3 800 57.8
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 3.9e-159 566.2 742 57.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 5.0e-159 565.8 809 58.6
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.1e-158 564.7 768 57.4
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.5e-158 564.3 744 58.7
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 4.3e-158 562.8 760 58.8
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 7.3e-158 562.0 810 56.9
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.0e-155 553.9 767 53.2
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.2e-154 550.4 791 56.3
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.4e-153 547.7 803 58.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.0e-152 543.9 800 55.1
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.0e-152 543.9 785 53.8
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 6.0e-152 542.3 809 57.2
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 6.0e-152 542.3 809 57.2
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.3e-151 540.4 815 52.9
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 2.3e-148 530.4 778 57.6
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.2e-147 528.1 775 51.0
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.5e-147 527.7 714 58.7
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.5e-147 527.7 714 58.7
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 6.4e-146 522.3 794 52.6
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 3.2e-145 520.0 799 51.2
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 4.1e-145 519.6 772 52.3
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 4.6e-144 516.2 745 56.2
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 6.0e-144 515.8 757 55.0
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 5.1e-143 512.7 855 51.1
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 8.6e-143 511.9 830 55.3
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.9e-142 510.8 793 55.5
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 4.7e-141 506.1 730 54.5
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 6.2e-141 505.8 768 54.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 8.1e-141 505.4 773 52.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.1e-140 505.0 807 53.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.4e-140 504.6 768 55.3
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 3.1e-140 503.4 788 50.8
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.2e-139 501.5 733 54.0
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 4.4e-139 499.6 721 54.6
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 7.8e-136 488.8 790 51.6
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.0e-135 488.4 800 53.8
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.2e-132 476.1 790 50.6
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.4e-129 467.2 740 52.2
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 3.2e-129 466.8 756 47.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 3.5e-128 463.4 792 51.8
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.1e-126 458.4 788 49.1
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.3e-126 456.8 502 59.2
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.9e-122 443.7 805 54.2
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 2.9e-122 443.7 788 47.8
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 3.5e-120 436.8 788 47.0
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 9.3e-113 412.1 794 54.2
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.0e-106 392.1 420 58.3
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 2.5e-105 387.5 774 47.2
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 8.7e-103 379.0 781 40.8
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 6.5e-98 362.8 809 41.2
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.5e-94 350.9 558 43.0
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 3.0e-87 327.4 557 42.4
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 4.1e-76 290.4 771 37.9
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.0e-74 285.8 563 39.1
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 8.0e-72 276.2 190 82.1
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.2e-70 272.3 274 59.5
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.7e-70 269.2 222 70.3
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.4e-68 264.6 255 62.0
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 2.2e-66 258.1 545 51.7
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 7.2e-65 253.1 545 49.2
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 1.2e-62 245.7 202 67.8
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 7.5e-62 243.0 515 39.6
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 9.2e-52 209.5 247 52.6
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.9e-50 204.5 132 86.4
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 8.0e-48 196.4 510 46.7
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 2.9e-45 188.0 137 83.9
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.6e-43 182.2 123 80.5
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 4.6e-43 180.6 242 53.7
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.4e-36 157.1 382 51.6
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 9.2e-36 156.4 177 52.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-35 153.7 350 36.0
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 5.6e-33 147.1 166 57.2
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 7.8e-27 126.7 280 62.1
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 2.4e-20 105.1 121 55.4
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 7.1e-20 103.6 285 57.5
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 9.2e-20 103.2 95 67.4
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-17 96.3 78 59.0
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 3.3e-17 94.7 161 44.1
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 9.6e-17 93.2 79 67.1
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 3.6e-16 91.3 56 85.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 9.0e-15 86.7 63 73.0
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 4.4e-14 84.3 106 47.2
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 7.6e-14 83.6 63 71.4
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.2e-11 76.3 99 45.5
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.7e-10 72.4 147 43.5
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 8.7e-10 70.1 117 41.9
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 9.6e-09 66.6 47 80.9
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 8.1e-08 63.5 227 32.2
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.8e-07 62.4 52 69.2
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 4.0e-07 61.2 66 53.0
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-06 59.7 51 58.8
Oeu020654.1 Olea europaea HOM05D001343 ORTHO05D007223 5.8e-06 57.4 37 81.1
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 9.9e-06 56.6 92 38.0


User provided reference genes

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