Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1559.3 845 100.0
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1447.6 843 93.5
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1101.7 844 71.2
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1100.1 831 72.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1094.7 838 72.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1093.6 837 71.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1089.3 834 71.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1087.0 835 71.3
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1086.2 831 70.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1078.5 842 70.7
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 0.0e+00 1075.8 834 70.5
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.3e-311 1072.0 838 69.7
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.5e-310 1069.3 845 69.6
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.4e-310 1067.8 836 69.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.2e-307 1059.7 854 67.4
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 2.0e-307 1058.9 836 70.5
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 3.5e-307 1058.1 831 70.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 7.7e-307 1057.0 834 68.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.0e-303 1045.0 844 68.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.4e-302 1041.2 835 69.7
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.1e-300 1036.6 836 67.8
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.8e-300 1035.8 840 67.9
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 4.5e-299 1031.2 838 67.9
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 5.0e-298 1027.7 838 67.1
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.0e-298 1027.7 837 67.7
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 5.0e-298 1027.7 846 67.5
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 8.6e-298 1026.9 838 67.2
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.5e-297 1026.2 837 68.2
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 7.2e-297 1023.8 838 66.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 9.5e-297 1023.5 836 67.7
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.2e-296 1023.1 844 66.1
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.1e-296 1020.8 829 66.5
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-295 1020.0 835 66.1
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.4e-295 1019.6 833 66.1
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.8e-295 1019.2 837 67.4
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 6.8e-295 1017.3 840 66.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.4e-294 1015.0 838 66.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.2e-293 1012.3 833 66.4
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.1e-292 1008.4 833 65.8
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.3e-289 997.3 833 65.4
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.6e-288 996.1 828 65.1
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 6.1e-288 994.2 844 65.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.8e-287 992.6 843 64.8
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 4.4e-286 988.0 834 64.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.5e-286 987.3 846 65.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.7e-282 976.1 855 63.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.3e-282 975.7 846 65.4
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 3.9e-282 974.9 838 65.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 8.6e-282 973.8 836 63.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.3e-277 959.9 834 62.7
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.7e-277 958.4 841 63.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.4e-277 957.6 832 62.7
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.4e-276 954.5 846 62.1
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-273 946.4 842 62.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 7.3e-273 944.1 829 63.0
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 5.8e-270 934.5 866 60.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.7e-269 932.9 839 61.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.7e-269 931.8 850 61.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.1e-268 930.2 848 61.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.4e-268 929.9 841 62.2
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.4e-268 929.9 831 63.7
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.9e-268 929.5 842 61.3
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-266 923.7 844 62.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 8.6e-266 920.6 836 62.3
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.5e-265 919.1 838 61.8
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.6e-264 916.4 846 60.0
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-264 914.8 839 60.4
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.4e-263 912.5 842 61.0
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.3e-258 896.0 835 60.1
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 8.7e-258 894.0 815 61.6
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.3e-257 891.7 925 56.1
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 4.7e-256 888.3 832 61.9
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 7.6e-254 880.9 839 59.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.9e-249 866.3 843 59.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 9.6e-249 864.0 844 58.6
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 6.4e-245 851.3 818 60.0
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 6.4e-245 851.3 876 56.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.1e-244 850.5 882 56.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.4e-244 849.4 816 59.9
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-244 849.4 816 59.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 4.2e-244 848.6 790 59.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 4.6e-243 845.1 848 57.5
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-242 843.6 839 58.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-242 843.6 837 57.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.3e-242 842.8 833 57.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.7e-242 840.9 839 59.8
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.1e-241 840.5 879 55.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-240 837.0 819 58.9
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.3e-240 837.0 819 58.9
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.9e-237 825.9 836 57.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.7e-232 808.9 834 55.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.5e-227 792.3 830 55.8
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.2e-222 777.3 841 54.8
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.6e-219 765.4 683 62.1
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 5.7e-217 758.4 850 52.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-216 756.5 673 62.1
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 9.4e-212 741.1 831 53.4
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 3.3e-209 732.6 852 49.9
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 8.0e-203 711.4 844 51.5
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.4e-202 710.7 614 63.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-197 694.1 548 66.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 8.6e-173 611.7 600 58.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.6e-171 606.3 607 57.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.3e-162 577.0 884 41.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.3e-149 534.6 453 64.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 4.3e-148 529.6 381 74.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 5.1e-141 506.1 901 38.3
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.8e-139 500.4 850 39.4
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 5.8e-137 492.7 840 39.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.8e-131 473.0 393 66.9
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.6e-124 449.5 489 53.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.3e-116 423.3 452 55.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.6e-113 414.1 451 55.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.5e-108 398.3 937 32.4
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.9e-106 389.4 310 67.7
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 5.0e-96 356.7 450 48.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 8.5e-96 355.9 292 63.4
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 9.1e-90 335.9 243 74.5
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-87 328.9 236 75.4
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.2e-87 327.4 334 57.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 4.7e-86 323.6 227 72.2
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.9e-85 320.5 287 64.5
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.9e-80 304.3 337 52.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 2.2e-72 278.1 200 71.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.8e-67 261.2 268 57.5
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.7e-64 251.9 195 69.2
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.8e-61 241.9 212 60.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.2e-60 239.2 944 28.1
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.9e-57 226.9 155 71.6
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.3e-51 206.5 182 62.1
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 6.2e-46 190.3 231 51.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.4e-42 177.2 158 58.2
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.5e-39 169.1 157 58.0
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.2e-36 159.5 170 54.7
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.9e-32 144.4 181 50.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.5e-31 142.5 510 26.7
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.6e-30 139.0 274 40.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-30 137.5 184 43.5
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.1e-30 136.7 111 65.8
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 6.8e-29 133.7 662 25.1
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 3.4e-28 131.3 276 38.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-27 128.6 283 37.8
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 6.0e-25 120.6 78 71.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.0e-24 119.8 104 57.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.6e-22 112.5 611 25.0
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-18 99.0 118 50.8
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.7e-17 95.1 76 65.8
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.0e-16 93.2 198 43.4
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.3e-16 92.8 72 65.3
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.3e-16 92.0 178 41.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.9e-15 89.0 201 42.3
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.2e-14 84.0 50 80.0
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.4e-13 82.0 86 58.1
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-12 78.6 131 42.7
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.5e-12 77.8 102 50.0
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.8e-12 77.4 56 66.1
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 2.7e-09 68.6 91 42.9
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.5e-09 68.2 65 52.3
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 7.9e-09 67.0 54 59.3
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.0e-08 66.6 51 60.8
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.9e-07 62.4 53 56.6
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 9.6e-07 60.1 47 59.6
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.8e-06 58.5 47 59.6
arahy.Tifrunner.gnm1.ann1.3YA0AF Arachis hypogaea HOM05D004092 ORTHO05D005448 3.7e-06 58.2 57 54.4


User provided reference genes

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