Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.9e-131 470.7 245 100.0
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.5e-64 248.4 245 62.9
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.6e-58 230.3 245 58.4
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 4.5e-58 228.8 247 58.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.0e-53 213.4 245 53.5
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 4.9e-52 208.8 245 53.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.4e-51 207.2 245 52.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.0e-51 204.9 245 52.2
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.2e-51 204.5 245 51.8
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.2e-50 204.1 245 52.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 7.8e-50 201.4 244 52.5
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.3e-49 200.7 245 51.0
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.7e-49 200.3 236 51.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.3e-49 199.9 245 51.8
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.8e-49 199.1 237 50.6
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.6e-49 198.4 271 47.6
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 8.6e-49 198.0 245 50.2
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.5e-48 197.2 246 52.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.5e-48 196.4 237 50.2
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 4.3e-48 195.7 170 62.9
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 4.3e-48 195.7 236 50.4
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 4.3e-48 195.7 251 49.8
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 5.6e-48 195.3 245 50.2
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 5.6e-48 195.3 245 50.2
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 5.6e-48 195.3 245 49.8
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 5.6e-48 195.3 229 52.8
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.3e-48 194.9 243 48.6
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.2e-47 194.1 231 52.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.2e-47 194.1 243 50.6
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.1e-47 193.4 228 51.8
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 3.6e-47 192.6 243 49.4
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 4.7e-47 192.2 231 51.5
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.1e-47 191.8 243 49.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.0e-46 191.0 243 48.6
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.4e-46 190.7 227 52.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.4e-46 190.7 227 52.4
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.8e-46 190.3 245 49.0
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.0e-46 189.1 172 63.4
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.0e-46 189.1 229 52.4
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.0e-46 189.1 245 50.2
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 6.8e-46 188.3 238 48.7
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 8.9e-46 188.0 228 50.4
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 8.9e-46 188.0 243 48.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.2e-45 187.6 245 48.2
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.5e-45 187.2 245 49.0
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.4e-45 185.7 238 47.5
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 5.7e-45 185.3 224 51.3
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 7.5e-45 184.9 223 50.2
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 7.5e-45 184.9 243 48.1
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 7.5e-45 184.9 172 62.8
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 7.5e-45 184.9 173 59.5
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 9.8e-45 184.5 225 50.7
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.3e-44 184.1 224 50.0
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-44 184.1 172 61.6
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.3e-44 184.1 231 48.5
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.7e-44 183.7 227 49.8
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.7e-44 183.7 223 50.2
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.7e-44 183.7 223 50.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.9e-44 183.0 198 56.6
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.9e-44 183.0 244 48.4
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.9e-44 183.0 225 50.7
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 4.9e-44 182.2 227 48.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.4e-44 181.8 223 49.8
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 8.3e-44 181.4 230 48.7
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 8.3e-44 181.4 227 48.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 8.3e-44 181.4 229 48.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-43 180.6 233 48.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.4e-43 180.6 275 44.7
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.4e-43 180.6 245 48.6
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.4e-43 180.6 219 50.2
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 3.2e-43 179.5 172 58.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 3.2e-43 179.5 225 48.9
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 4.1e-43 179.1 223 48.9
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 4.1e-43 179.1 223 48.9
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.4e-43 178.7 165 61.2
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 5.4e-43 178.7 227 48.5
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 7.0e-43 178.3 223 49.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 9.2e-43 177.9 223 48.9
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 9.2e-43 177.9 223 48.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 9.2e-43 177.9 223 48.9
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.2e-43 177.9 227 46.3
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 9.2e-43 177.9 226 47.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-42 177.6 226 47.3
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.6e-42 177.2 245 46.5
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.6e-42 177.2 161 60.9
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.7e-42 176.4 222 48.6
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-42 176.4 227 45.8
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.7e-42 176.4 227 46.3
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 3.5e-42 176.0 228 47.8
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 3.5e-42 176.0 240 47.1
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 3.5e-42 176.0 240 47.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 3.5e-42 176.0 181 56.9
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.6e-42 175.6 227 45.4
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.6e-42 175.6 227 45.4
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-41 174.5 226 46.5
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.3e-41 174.1 244 46.7
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.3e-41 174.1 244 46.7
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.3e-41 174.1 244 46.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.3e-41 174.1 232 47.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.3e-41 174.1 234 46.6
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.7e-41 173.7 240 45.4
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-41 173.7 227 45.4
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.7e-41 173.7 245 48.2
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-41 172.6 227 45.8
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 3.9e-41 172.6 227 46.7
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.6e-41 171.8 247 46.2
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.1e-40 171.0 227 46.7
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.9e-40 170.2 227 47.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 4.3e-40 169.1 245 47.3
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 5.6e-40 168.7 245 46.5
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-39 167.2 155 59.4
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-39 167.2 155 59.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.6e-39 167.2 166 56.0
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.8e-39 166.4 245 46.5
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-39 166.4 155 59.4
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-39 166.4 155 59.4
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-39 166.0 155 59.4
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.3e-38 163.3 227 44.5
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-38 162.5 155 58.1
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-38 162.5 155 58.1
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.2e-38 162.2 150 60.0
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.2e-38 162.2 150 60.0
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 6.8e-38 161.8 227 44.1
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 6.8e-38 161.8 172 54.1
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-37 161.0 163 55.2
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.2e-37 161.0 227 44.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.8e-37 158.7 227 42.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-36 156.4 227 41.9
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-35 154.1 227 41.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 7.0e-35 151.8 236 43.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 6.0e-34 148.7 227 43.6
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.1e-31 140.2 143 58.7
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.1e-31 140.2 208 44.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.8e-31 139.8 240 39.2
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 3.4e-29 132.9 165 45.5
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 5.8e-29 132.1 188 46.8
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.3e-28 131.0 164 47.0
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.7e-28 130.6 174 40.2
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.9e-28 129.8 240 38.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.7e-28 129.4 143 54.5
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 5.4e-27 125.6 155 44.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.1e-25 119.0 128 54.7
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.0e-21 107.1 128 46.9
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.9e-20 103.2 63 81.0
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.9e-20 103.2 59 84.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.2e-19 99.8 157 36.9
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 9.2e-19 98.2 110 50.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 9.2e-19 98.2 117 49.6
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.8e-18 95.1 63 73.0
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 7.8e-18 95.1 111 53.2
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 7.8e-18 95.1 111 53.2
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.7e-17 94.0 155 32.3
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-17 92.4 111 51.4
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-16 90.9 119 43.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 3.3e-16 89.7 78 62.8
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-15 87.4 58 75.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.1e-15 87.0 104 49.0
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.4e-14 84.3 76 63.2
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.2e-14 82.4 101 51.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 7.8e-10 68.6 171 27.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-09 68.2 49 71.4
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-09 68.2 49 71.4
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.3e-09 67.8 47 66.0
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 6.6e-09 65.5 84 39.3
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 5.6e-08 62.4 95 41.1


User provided reference genes

Program Settings