Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0064400 Salix brachista HOM05D008997 ORTHO05D011051 1.3e-55 219.5 115 100.0
Potri.005G078400 Populus trichocarpa HOM05D008997 ORTHO05D011051 1.3e-52 209.5 115 93.9
Manes.10G091000 Manihot esculenta HOM05D008997 ORTHO05D011051 2.1e-21 105.9 103 54.4
Atru.chr8.2628 Acer truncatum HOM05D008997 ORTHO05D011051 6.1e-21 104.4 114 55.3
Ciclev10013116m.g Citrus clementina HOM05D008997 ORTHO05D011051 2.3e-20 102.4 74 66.2
COL.COLO4_11281 Corchorus olitorius HOM05D008997 ORTHO05D011051 3.0e-20 102.1 83 60.2
Thecc.03G319000 Theobroma cacao HOM05D008997 ORTHO05D011051 7.4e-19 97.4 83 54.2
PGR031G0389 Punica granatum HOM05D008997 ORTHO05D011051 3.7e-18 95.1 71 63.4
Eucgr.D02561 Eucalyptus grandis HOM05D008997 ORTHO05D011051 1.0e-15 87.0 70 58.6
Prupe.1G353500 Prunus persica HOM05D008997 ORTHO05D011051 1.1e-11 73.6 112 43.8
MD15G1000800 Malus domestica HOM05D008997 ORTHO05D011051 1.5e-11 73.2 116 46.6
CiPaw.11G075100 Carya illinoinensis HOM05D008997 ORTHO05D011051 4.3e-11 71.6 67 55.2
MD08G1001500 Malus domestica HOM05D008997 ORTHO05D011051 4.3e-11 71.6 116 45.7
THA.LOC104798526 Tarenaya hassleriana HOM05D013199 ORTHO05D015353 5.7e-11 71.2 88 42.0
QL12p004181 Quercus lobata HOM05D008997 ORTHO05D011051 4.8e-10 68.2 102 42.2
Hma1.2p1_0680F.1_g202390 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.1e-09 67.0 107 37.4
Sed0009134 Sechium edule HOM05D008997 ORTHO05D011051 1.1e-09 67.0 78 48.7
Lalb_Chr05g0215081 Lupinus albus HOM05D008997 ORTHO05D011051 1.4e-09 66.6 110 35.5
Lalb_Chr09g0324991 Lupinus albus HOM05D008997 ORTHO05D011051 1.4e-09 66.6 110 35.5
Phvul.002G121500 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 1.4e-09 66.6 73 45.2
Aa31LG9G15740 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.8e-09 66.2 104 39.4
RcHm_v2.0_Chr6g0304331 Rosa chinensis HOM05D008997 ORTHO05D011051 1.8e-09 66.2 87 43.7
Lj2g0023362 Lotus japonicus HOM05D000827 ORTHO05D001318 2.4e-09 65.9 111 33.3
Glyma.11G090500 Glycine max HOM05D008997 ORTHO05D011051 3.1e-09 65.5 73 43.8
VMungo0464G1626 Vigna mungo HOM05D008997 ORTHO05D011051 3.1e-09 65.5 73 45.2
CSS0043160 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 4.1e-09 65.1 66 48.5
Lsat_1_v5_gn_6_17261 Lactuca sativa HOM05D000827 ORTHO05D001318 4.1e-09 65.1 77 44.2
Phvul.004G038900 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 4.1e-09 65.1 73 43.8
Glyma.11G090400 Glycine max HOM05D000827 ORTHO05D001318 5.3e-09 64.7 77 44.2
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 6.9e-09 64.3 87 41.4
Lj2g0013331 Lotus japonicus HOM05D008997 ORTHO05D011051 6.9e-09 64.3 79 41.8
PSO017G6582 Papaver somniferum HOM05D000827 ORTHO05D001318 9.1e-09 63.9 113 38.9
ATR0568G208 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.2e-08 63.5 77 42.9
CANSAT80G2464 Cannabis sativa HOM05D000827 ORTHO05D001318 1.2e-08 63.5 77 41.6
Peaxi162Scf00045g00722 Petunia axillaris HOM05D000827 ORTHO05D001318 1.2e-08 63.5 68 44.1
Glyma.01G154200 Glycine max HOM05D000827 ORTHO05D001318 1.5e-08 63.2 77 42.9
HanXRQChr01g0025031 Helianthus annuus HOM05D000827 ORTHO05D001318 1.5e-08 63.2 77 41.6
Rhsim11G0036900 Rhododendron simsii HOM05D000827 ORTHO05D001318 1.5e-08 63.2 69 44.9
FAN21G1189 Fragaria x ananassa HOM05D008997 ORTHO05D011051 2.0e-08 62.8 87 40.2
FAN21G1803 Fragaria x ananassa HOM05D008997 ORTHO05D011051 2.0e-08 62.8 87 40.2
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.0e-08 62.8 87 40.2
Gohir.D08G170400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.0e-08 62.8 80 43.8
GSVIVG01019325001 Vitis vinifera HOM05D000827 ORTHO05D001318 2.0e-08 62.8 77 45.5
AL4G31640 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 2.6e-08 62.4 77 42.9
AT2G35605 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 2.6e-08 62.4 77 42.9
Ca_25045_v3 Cicer arietinum L. HOM05D008997 ORTHO05D011051 2.6e-08 62.4 110 36.4
HanXRQChr01g0018471 Helianthus annuus HOM05D000827 ORTHO05D001318 2.6e-08 62.4 68 45.6
THA.LOC104814391 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 3.4e-08 62.0 107 35.5
vmacro00092 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 3.4e-08 62.0 68 45.6
Cfa012293 Carpinus fangiana HOM05D000827 ORTHO05D001318 4.5e-08 61.6 112 34.8
Ca_25044_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 4.5e-08 61.6 122 35.2
PSO063G1923 Papaver somniferum HOM05D000827 ORTHO05D001318 4.5e-08 61.6 111 37.8
TPR.G8981 Trifolium pratense HOM05D008997 ORTHO05D011051 4.5e-08 61.6 109 31.2
TAR629G0081 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.5e-08 61.6 79 40.5
FvH4_2g37377 Fragaria vesca HOM05D008997 ORTHO05D011051 5.9e-08 61.2 87 40.2
MD02G1231800 Malus domestica HOM05D000827 ORTHO05D001318 5.9e-08 61.2 77 42.9
ClCG05G002470 Citrullus lanatus HOM05D000827 ORTHO05D001318 7.7e-08 60.8 68 42.6
Gorai.004G177900 Gossypium raimondii HOM05D000827 ORTHO05D001318 7.7e-08 60.8 80 42.5
Lalb_Chr16g0380361 Lupinus albus HOM05D000827 ORTHO05D001318 7.7e-08 60.8 77 39.0
Thhalv10017454m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 1.0e-07 60.5 77 42.9
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.0e-07 60.5 87 39.1
Gohir.A08G149400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.0e-07 60.5 80 42.5
Gohir.D11G237200 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.0e-07 60.5 77 42.9
Gorai.007G250300 Gossypium raimondii HOM05D000827 ORTHO05D001318 1.0e-07 60.5 77 42.9
Lalb_Chr05g0215071 Lupinus albus HOM05D000827 ORTHO05D001318 1.0e-07 60.5 117 33.3
Medtr5g025520 Medicago truncatula HOM05D008997 ORTHO05D011051 1.0e-07 60.5 79 39.2
Nitab4.5_0000030g0470 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.0e-07 60.5 68 41.2
Psat2g145480 Pisum sativum HOM05D008997 ORTHO05D011051 1.0e-07 60.5 109 34.9
Nitab4.5_0002244g0100 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.3e-07 60.1 68 42.6
BcaB07g32822 Brassica carinata HOM05D000827 ORTHO05D001318 1.7e-07 59.7 77 40.3
CsaV3_3G009900 Cucumis sativus L. HOM05D000827 ORTHO05D001318 1.7e-07 59.7 68 42.6
ECA248G2256 Erigeron canadensis HOM05D000827 ORTHO05D001318 1.7e-07 59.7 69 46.4
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.7e-07 59.7 87 40.2
EL10Ac4g08090 Beta vulgaris HOM05D000827 ORTHO05D001318 2.2e-07 59.3 78 42.3
Carub.0004s1729 Capsella rubella HOM05D000827 ORTHO05D001318 2.2e-07 59.3 80 41.2
CDE02G1634 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 2.2e-07 59.3 67 41.8
MD07G1081700 Malus domestica HOM05D000827 ORTHO05D001318 2.2e-07 59.3 68 41.2
Cc02_g26480 Coffea canephora HOM05D000827 ORTHO05D001318 2.9e-07 58.9 77 40.3
Nitab4.5_0016158g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.9e-07 58.9 68 42.6
Actinidia05830 Actinidia chinensis HOM05D000827 ORTHO05D001318 3.8e-07 58.5 68 41.2
A09p34620 Brassica napus HOM05D000827 ORTHO05D001318 3.8e-07 58.5 92 38.0
BolC5t31819H Brassica oleracea HOM05D000827 ORTHO05D001318 3.8e-07 58.5 77 40.3
BraA09t38998Z Brassica rapa HOM05D000827 ORTHO05D001318 3.8e-07 58.5 92 38.0
CDE09G0627 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 3.8e-07 58.5 67 41.8
Sed0016100 Sechium edule HOM05D000827 ORTHO05D001318 3.8e-07 58.5 68 41.2
Solyc08g075400.3 Solanum lycopersicum HOM05D000827 ORTHO05D001318 3.8e-07 58.5 68 39.7
Sopen08g024030 Solanum pennellii HOM05D000827 ORTHO05D001318 3.8e-07 58.5 68 39.7
PGSC0003DMG400001965 Solanum tuberosum HOM05D000827 ORTHO05D001318 3.8e-07 58.5 68 39.7
TAR636G2815 Trochodendron aralioides HOM05D000827 ORTHO05D001318 3.8e-07 58.5 68 41.2
vmacro13599 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 3.8e-07 58.5 77 40.3
AT1G31760 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 5.0e-07 58.2 68 38.2
TPR.G8987 Trifolium pratense HOM05D000827 ORTHO05D001318 5.0e-07 58.2 77 37.7
GSVIVG01036871001 Vitis vinifera HOM05D000827 ORTHO05D001318 5.0e-07 58.2 80 47.5
CSS0035225 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 6.5e-07 57.8 77 40.3
MELO3C006211.2 Cucumis melo HOM05D000827 ORTHO05D001318 6.5e-07 57.8 68 39.7
Manes.09G133600 Manihot esculenta HOM05D000827 ORTHO05D001318 6.5e-07 57.8 77 41.6
Pp3c15_3710 Physcomitrium patens HOM05D000827 ORTHO05D001318 6.5e-07 57.8 68 44.1
Actinidia31732 Actinidia chinensis HOM05D000827 ORTHO05D001318 8.5e-07 57.4 108 36.1
AL1G45830 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 8.5e-07 57.4 77 36.4
CAN.G930.2 Capsicum annuum HOM05D000827 ORTHO05D001318 8.5e-07 57.4 111 33.3
COL.COLO4_11280 Corchorus olitorius HOM05D000827 ORTHO05D001318 8.5e-07 57.4 98 34.7
Prupe.2G106900 Prunus persica HOM05D000827 ORTHO05D001318 8.5e-07 57.4 68 42.6
BcaC05g27189 Brassica carinata HOM05D000827 ORTHO05D001318 1.1e-06 57.0 75 40.0
Dinv37426 Davidia involucrata HOM05D000827 ORTHO05D001318 1.1e-06 57.0 109 33.9
Medtr5g025500 Medicago truncatula HOM05D000827 ORTHO05D001318 1.1e-06 57.0 68 39.7
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 1.1e-06 57.0 108 33.3
Ciclev10033040m.g Citrus clementina HOM05D000827 ORTHO05D001318 1.4e-06 56.6 78 42.3
FvH4_7g08300 Fragaria vesca HOM05D000827 ORTHO05D001318 1.4e-06 56.6 68 42.6
FAN01G3073 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.4e-06 56.6 68 42.6
FAN03G1816 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.4e-06 56.6 68 42.6
FAN06G2126 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.4e-06 56.6 68 42.6
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.4e-06 56.6 67 43.3
Aa31LG5G14100 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.9e-06 56.2 68 42.6
CiPaw.12G054400 Carya illinoinensis HOM05D000827 ORTHO05D001318 1.9e-06 56.2 78 39.7
Duzib177G0213 Durio zibethinus HOM05D000827 ORTHO05D001318 1.9e-06 56.2 77 37.7
Nn1g09343 Nelumbo nucifera HOM05D000827 ORTHO05D001318 1.9e-06 56.2 112 33.0
Rhsim07G0047800 Rhododendron simsii HOM05D000827 ORTHO05D001318 1.9e-06 56.2 68 41.2
Nitab4.5_0001175g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.5e-06 55.8 68 41.2
QL04p053399 Quercus lobata HOM05D000827 ORTHO05D001318 2.5e-06 55.8 68 42.6
TWI32G0689 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 2.5e-06 55.8 77 39.0
Cc08_g05790 Coffea canephora HOM05D000827 ORTHO05D001318 3.2e-06 55.5 118 32.2
ECA233G5913 Erigeron canadensis HOM05D000827 ORTHO05D001318 3.2e-06 55.5 114 35.1
Sp1g27440 Schrenkiella parvula HOM05D000827 ORTHO05D001318 3.2e-06 55.5 77 37.7
PGSC0003DMG400018478 Solanum tuberosum HOM05D000827 ORTHO05D001318 3.2e-06 55.5 68 42.6
Thecc.03G319100 Theobroma cacao HOM05D000827 ORTHO05D001318 3.2e-06 55.5 77 39.0
Thecc.05G234600 Theobroma cacao HOM05D000827 ORTHO05D001318 3.2e-06 55.5 78 38.5
arahy.Tifrunner.gnm1.ann1.046HV4 Arachis hypogaea HOM05D000827 ORTHO05D001318 4.2e-06 55.1 83 37.3
arahy.Tifrunner.gnm1.ann1.2I1ZFA Arachis hypogaea HOM05D000827 ORTHO05D001318 4.2e-06 55.1 83 37.3
TWI34G0874 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 4.2e-06 55.1 115 33.9
ClCG06G000610 Citrullus lanatus HOM05D000827 ORTHO05D001318 5.5e-06 54.7 68 41.2
Ciclev10013159m.g Citrus clementina HOM05D000827 ORTHO05D001318 5.5e-06 54.7 113 35.4
Duzib177G0432 Durio zibethinus HOM05D000827 ORTHO05D001318 5.5e-06 54.7 77 37.7
FAN21G1848 Fragaria x ananassa HOM05D008997 ORTHO05D011051 5.5e-06 54.7 102 35.3
Gohir.D08G238400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 5.5e-06 54.7 118 32.2
PGR042G0057 Punica granatum HOM05D000827 ORTHO05D001318 5.5e-06 54.7 109 36.7
PGR042G3744 Punica granatum HOM05D000827 ORTHO05D001318 5.5e-06 54.7 77 40.3
Sed0008232 Sechium edule HOM05D000827 ORTHO05D001318 5.5e-06 54.7 68 42.6
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 7.2e-06 54.3 62 46.8
A05p25580 Brassica napus HOM05D000827 ORTHO05D001318 7.2e-06 54.3 101 33.7
BraA05t21440Z Brassica rapa HOM05D000827 ORTHO05D001318 7.2e-06 54.3 101 33.7
FAN10G1218 Fragaria x ananassa HOM05D000827 ORTHO05D001318 7.2e-06 54.3 68 41.2
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 7.2e-06 54.3 62 45.2
SEGI_40966 Sequoiadendron giganteum HOM05D000827 ORTHO05D001318 7.2e-06 54.3 67 38.8
Solyc08g005590.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 7.2e-06 54.3 68 41.2
THA.LOC104820816 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 7.2e-06 54.3 113 34.5
Migut.E01374 Erythranthe guttata HOM05D000827 ORTHO05D001318 9.4e-06 53.9 68 38.2
Gorai.004G253900 Gossypium raimondii HOM05D000827 ORTHO05D001318 9.4e-06 53.9 78 37.2
SalBow5G5239 Salvia bowleyana HOM05D000827 ORTHO05D001318 9.4e-06 53.9 64 42.2
Sopen08g001620 Solanum pennellii HOM05D000827 ORTHO05D001318 9.4e-06 53.9 68 41.2


User provided reference genes

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