Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 1.3e-120 436.4 214 100.0
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 2.7e-99 365.5 214 87.9
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 7.9e-83 310.8 214 75.2
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 7.0e-71 271.2 201 70.6
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 5.6e-44 181.8 217 51.2
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 7.3e-44 181.4 214 54.7
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 1.2e-43 180.6 220 52.3
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 1.6e-43 180.3 216 52.8
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 1.6e-43 180.3 216 52.8
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 1.6e-43 180.3 214 53.3
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 6.1e-43 178.3 214 51.9
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 6.1e-43 178.3 215 50.7
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 2.3e-42 176.4 206 51.5
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 5.2e-42 175.3 216 50.9
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 6.8e-42 174.9 219 48.4
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 1.2e-41 174.1 216 50.5
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.2e-41 174.1 216 50.5
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 1.5e-41 173.7 215 53.0
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 9.8e-41 171.0 216 50.0
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 4.9e-40 168.7 208 50.5
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 3.2e-39 166.0 207 49.8
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 1.2e-38 164.1 217 48.4
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 1.6e-38 163.7 206 50.5
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.7e-37 160.2 209 48.3
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 5.0e-37 158.7 210 49.5
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 1.5e-36 157.1 210 48.6
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 1.5e-36 157.1 211 48.3
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 4.3e-36 155.6 210 48.1
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 5.2e-34 148.7 222 46.4
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 7.5e-33 144.8 201 45.8
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 1.4e-31 140.6 202 44.6
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 1.6e-30 137.1 217 43.8
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 1.0e-29 134.4 217 42.4
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 1.5e-28 130.6 163 45.4
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 3.6e-27 125.9 179 39.1
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 8.1e-27 124.8 201 41.3
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 8.1e-27 124.8 196 41.8
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 3.1e-26 122.9 200 40.0
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 6.8e-26 121.7 208 36.1
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 2.6e-25 119.8 218 38.5
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 4.4e-25 119.0 209 40.7
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 5.8e-25 118.6 209 34.9
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 7.5e-25 118.2 208 36.1
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 9.8e-25 117.9 188 41.5
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 1.7e-24 117.1 178 42.7
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 1.9e-23 113.6 190 42.6
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 2.4e-23 113.2 152 46.7
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 3.2e-23 112.8 207 39.6
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 9.2e-23 111.3 146 47.3
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 9.2e-23 111.3 125 48.8
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 1.6e-22 110.5 211 42.2
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 2.7e-22 109.8 181 43.1
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 4.6e-22 109.0 201 42.3
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 1.0e-21 107.8 123 50.4
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 3.0e-21 106.3 202 38.6
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 3.0e-21 106.3 178 45.5
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 6.6e-21 105.1 214 41.1
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 8.6e-21 104.8 210 33.8
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 3.6e-19 99.4 213 33.3
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 7.6e-17 91.7 208 32.7
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 9.9e-17 91.3 108 47.2
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 2.9e-16 89.7 178 36.5
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 4.9e-16 89.0 208 32.2
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 1.9e-15 87.0 126 46.0
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 3.2e-15 86.3 146 39.0
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 3.2e-15 86.3 208 31.2
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 7.1e-15 85.1 120 45.0
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 1.2e-14 84.3 144 41.0
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 4.7e-11 72.4 176 32.4
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 4.7e-11 72.4 190 29.5
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 1.4e-10 70.9 174 32.8
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.8e-10 70.5 150 40.7
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 1.8e-10 70.5 62 61.3
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 1.8e-10 70.5 173 32.9
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 4.0e-10 69.3 192 30.2
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 5.2e-10 68.9 208 28.4
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 6.9e-10 68.6 190 29.5
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 6.9e-10 68.6 213 28.2
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 6.9e-10 68.6 213 28.2
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 6.9e-10 68.6 210 28.1
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.2e-09 67.8 247 28.3
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.5e-09 67.4 240 27.1
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 2.0e-09 67.0 135 38.5
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 3.4e-09 66.2 197 29.9
Ca_12783_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 7.6e-09 65.1 165 31.5
Ca_12787_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 7.6e-09 65.1 165 31.5
Ca_29819_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 7.6e-09 65.1 165 31.5
CANSAT21G0730 Cannabis sativa HOM05D002476 ORTHO05D002652 9.9e-09 64.7 214 29.4
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 9.9e-09 64.7 216 28.2
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 9.9e-09 64.7 197 30.5
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 1.3e-08 64.3 190 29.5
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 2.2e-08 63.5 175 30.9
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 2.9e-08 63.2 184 29.9
SGA_v2.0_scaffold22G09959 Striga asiatica HOM05D002476 ORTHO05D002652 3.8e-08 62.8 131 29.8
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 4.9e-08 62.4 180 28.9
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 6.4e-08 62.0 198 29.8
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 8.4e-08 61.6 195 30.3
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 8.4e-08 61.6 195 30.3
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 8.4e-08 61.6 191 29.3
CDE10G0158 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 8.4e-08 61.6 203 28.1
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 8.4e-08 61.6 152 29.6
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.1e-07 61.2 208 27.4
CANSAT56G3996 Cannabis sativa HOM05D002476 ORTHO05D002652 1.1e-07 61.2 162 28.4
PSO135G0353 Papaver somniferum HOM05D002476 ORTHO05D002652 1.1e-07 61.2 199 26.6
ATR0758G001 Amborella trichopoda HOM05D002476 ORTHO05D010087 1.4e-07 60.8 127 35.4
CSS0042345 Camellia sinensis var. sinensis HOM05D002476 ORTHO05D002652 1.9e-07 60.5 228 28.1
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.9e-07 60.5 128 30.5
THA.LOC104802082 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 2.4e-07 60.1 153 30.7
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 3.2e-07 59.7 175 30.3
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 3.2e-07 59.7 177 31.1
PSO063G3833 Papaver somniferum HOM05D002476 ORTHO05D002652 3.2e-07 59.7 130 33.1
PSO170G6198 Papaver somniferum HOM05D002476 ORTHO05D002652 3.2e-07 59.7 130 33.1
Peaxi162Scf00740g00133 Petunia axillaris HOM05D002476 ORTHO05D002652 3.2e-07 59.7 143 31.5
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 4.2e-07 59.3 203 26.6
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 4.2e-07 59.3 183 29.5
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 5.4e-07 58.9 131 33.6
RcHm_v2.0_Chr1g0360101 Rosa chinensis HOM05D002476 ORTHO05D002652 5.4e-07 58.9 224 27.2
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 5.4e-07 58.9 188 28.7
Manes.01G244700 Manihot esculenta HOM05D002476 ORTHO05D002652 7.1e-07 58.5 215 27.4
Migut.N01533 Erythranthe guttata HOM05D002476 ORTHO05D002652 9.3e-07 58.2 131 31.3
Psat4g214720 Pisum sativum HOM05D002476 ORTHO05D002652 9.3e-07 58.2 200 27.5
TAR629G0955 Trochodendron aralioides HOM05D002476 ORTHO05D002652 9.3e-07 58.2 70 44.3
Actinidia20251 Actinidia chinensis HOM05D002476 ORTHO05D002652 1.2e-06 57.8 134 32.8
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 1.2e-06 57.8 191 29.8
CDE04G0480 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.2e-06 57.8 128 31.2
Lsat_1_v5_gn_7_880 Lactuca sativa HOM05D002476 ORTHO05D002652 1.2e-06 57.8 194 26.8
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.6e-06 57.4 196 28.1
Psat6g035000 Pisum sativum HOM05D002476 ORTHO05D002652 1.6e-06 57.4 132 31.1
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.6e-06 57.4 219 24.2
Lalb_Chr08g0240141 Lupinus albus HOM05D002476 ORTHO05D002652 2.1e-06 57.0 164 29.3
Nn3g18948 Nelumbo nucifera HOM05D002476 ORTHO05D002652 2.1e-06 57.0 165 31.5
PGSC0003DMG400018529 Solanum tuberosum HOM05D002476 ORTHO05D002652 2.1e-06 57.0 74 40.5
CAN.G1415.19 Capsicum annuum HOM05D002476 ORTHO05D002652 2.7e-06 56.6 142 34.5
FAN10G1192 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.7e-06 56.6 227 27.8
Lj9A600T51 Lonicera japonica HOM05D002476 ORTHO05D002652 2.7e-06 56.6 61 44.3
Prupe.2G190700 Prunus persica HOM05D002476 ORTHO05D002652 2.7e-06 56.6 159 28.9
PGSC0003DMG400000234 Solanum tuberosum HOM05D002476 ORTHO05D002652 2.7e-06 56.6 130 32.3
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 3.5e-06 56.2 196 27.6
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 3.5e-06 56.2 196 27.6
Cfa003786 Carpinus fangiana HOM05D002476 ORTHO05D002652 3.5e-06 56.2 176 27.8
ECA234G4012 Erigeron canadensis HOM05D002476 ORTHO05D002652 3.5e-06 56.2 194 29.4
FAN01G1628 Fragaria x ananassa HOM05D002476 ORTHO05D002652 3.5e-06 56.2 268 23.9
FAN03G2932 Fragaria x ananassa HOM05D002476 ORTHO05D002652 3.5e-06 56.2 269 26.4
Nitab4.5_0005491g0030 Nicotiana tabacum HOM05D002476 ORTHO05D002652 3.5e-06 56.2 139 30.9
PSO384G4994 Papaver somniferum HOM05D002476 ORTHO05D002652 3.5e-06 56.2 199 26.1
arahy.Tifrunner.gnm1.ann1.0E4TYB Arachis hypogaea HOM05D002476 ORTHO05D002652 4.6e-06 55.8 123 32.5
arahy.Tifrunner.gnm1.ann1.9N50L0 Arachis hypogaea HOM05D002476 ORTHO05D002652 4.6e-06 55.8 180 28.3
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 4.6e-06 55.8 174 29.3
CAN.G481.27 Capsicum annuum HOM05D002476 ORTHO05D002652 4.6e-06 55.8 74 40.5
Hma1.2p1_1587F.1_g292240 Hydrangea macrophylla HOM05D002476 ORTHO05D002652 4.6e-06 55.8 130 30.8
Lj1g0018688 Lotus japonicus HOM05D002476 ORTHO05D002652 4.6e-06 55.8 152 30.3
Potri.002G173200 Populus trichocarpa HOM05D002476 ORTHO05D002652 4.6e-06 55.8 136 30.9
Thecc.01G340300 Theobroma cacao HOM05D002476 ORTHO05D002652 4.6e-06 55.8 235 25.5
Actinidia06141 Actinidia chinensis HOM05D002476 ORTHO05D002652 6.0e-06 55.5 72 43.1
arahy.Tifrunner.gnm1.ann1.2ZXA1E Arachis hypogaea HOM05D002476 ORTHO05D002652 6.0e-06 55.5 179 27.4
Hma1.2p1_0101F.1_g049300 Hydrangea macrophylla HOM05D002476 ORTHO05D002652 6.0e-06 55.5 61 47.5
Nitab4.5_0000548g0050 Nicotiana tabacum HOM05D002476 ORTHO05D002652 6.0e-06 55.5 145 30.3
SalBow2G2074 Salvia bowleyana HOM05D002476 ORTHO05D002652 6.0e-06 55.5 174 29.9
SEGI_39687 Sequoiadendron giganteum HOM05D002476 ORTHO05D002652 6.0e-06 55.5 135 34.8
Atru.chr5.689 Acer truncatum HOM05D002476 ORTHO05D002652 7.8e-06 55.1 134 32.1
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 7.8e-06 55.1 117 34.2
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 7.8e-06 55.1 183 28.4
FAN10G2775 Fragaria x ananassa HOM05D002476 ORTHO05D002652 7.8e-06 55.1 231 25.5
Gohir.A11G098000 Gossypium hirsutum HOM05D002476 ORTHO05D002652 7.8e-06 55.1 229 27.1
HanXRQChr04g0120481 Helianthus annuus HOM05D002476 ORTHO05D002652 7.8e-06 55.1 133 35.3
Medtr1g007840 Medicago truncatula HOM05D002476 ORTHO05D002652 7.8e-06 55.1 162 30.9
Rhsim09G0206500 Rhododendron simsii HOM05D002476 ORTHO05D002652 7.8e-06 55.1 139 33.8


User provided reference genes

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