Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 5.4e-83 311.2 191 100.0
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.7e-20 103.6 60 93.3
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 4.4e-16 89.0 43 95.3
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 1.1e-14 84.3 41 92.7
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 7.0e-14 81.6 63 63.5
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.6e-13 80.5 44 88.6
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 3.5e-13 79.3 44 84.1
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 4.5e-13 79.0 41 85.4
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 4.5e-13 79.0 43 83.7
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 5.9e-13 78.6 44 81.8
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 5.9e-13 78.6 43 81.4
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.0e-12 77.8 43 86.0
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.0e-12 77.8 43 86.0
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 1.0e-12 77.8 63 60.3
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 1.3e-12 77.4 44 81.8
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 1.3e-12 77.4 44 81.8
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.3e-12 77.4 43 81.4
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.3e-12 77.4 43 81.4
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.3e-12 77.4 43 81.4
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.3e-12 77.4 43 81.4
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 1.3e-12 77.4 67 74.6
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 1.7e-12 77.0 42 83.3
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 1.7e-12 77.0 44 81.8
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 1.7e-12 77.0 59 72.9
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 1.7e-12 77.0 59 72.9
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 2.2e-12 76.6 43 83.7
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 2.2e-12 76.6 44 79.5
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.2e-12 76.6 43 81.4
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 2.2e-12 76.6 44 79.5
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 2.2e-12 76.6 44 79.5
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 2.2e-12 76.6 70 60.0
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.9e-12 76.3 44 77.3
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 5.0e-12 75.5 43 79.1
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 5.0e-12 75.5 44 77.3
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 5.0e-12 75.5 62 66.1
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 6.5e-12 75.1 44 79.5
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 8.5e-12 74.7 43 81.4
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 8.5e-12 74.7 68 61.8
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 8.5e-12 74.7 56 75.0
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 1.1e-11 74.3 66 60.6
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.5e-11 73.9 40 82.5
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 1.5e-11 73.9 44 79.5
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 1.9e-11 73.6 44 75.0
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.9e-11 73.6 43 79.1
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 1.9e-11 73.6 44 75.0
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 2.5e-11 73.2 42 73.8
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 5.5e-11 72.0 43 79.1
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 5.5e-11 72.0 43 79.1
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 5.5e-11 72.0 44 72.7
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 5.5e-11 72.0 59 64.4
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 7.2e-11 71.6 44 72.7
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 7.2e-11 71.6 44 72.7
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 7.2e-11 71.6 60 63.3
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 9.4e-11 71.2 43 74.4
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.2e-10 70.9 75 57.3
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 1.6e-10 70.5 44 77.3
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.6e-10 70.5 43 72.1
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 2.7e-10 69.7 45 73.3
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 2.7e-10 69.7 36 83.3
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.7e-10 69.7 66 66.7
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 3.6e-10 69.3 47 72.3
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 4.7e-10 68.9 58 63.8
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 6.1e-10 68.6 44 75.0
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 6.1e-10 68.6 66 66.7
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 6.1e-10 68.6 41 75.6
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 6.1e-10 68.6 39 76.9
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 8.0e-10 68.2 38 76.3
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 8.0e-10 68.2 47 68.1
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 1.8e-09 67.0 59 59.3
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 2.3e-09 66.6 34 82.4
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.3e-09 66.6 41 75.6
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 2.3e-09 66.6 34 85.3
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 3.0e-09 66.2 33 87.9
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.0e-09 66.2 33 87.9
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 5.2e-09 65.5 44 72.7
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 8.8e-09 64.7 34 82.4
Pp3c16_16780 Physcomitrium patens HOM05D006246 ORTHO05D007932 2.0e-08 63.5 44 70.5
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 2.0e-08 63.5 34 79.4
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 2.0e-08 63.5 58 58.6
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 2.0e-08 63.5 45 71.1
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 3.4e-08 62.8 57 59.6
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 4.4e-08 62.4 62 58.1
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 7.5e-08 61.6 50 62.0
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 9.8e-08 61.2 56 64.3
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.3e-07 60.8 42 71.4
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 3.7e-07 59.3 47 61.7
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 4.8e-07 58.9 74 43.2
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 1.1e-06 57.8 56 53.6
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.4e-06 56.6 41 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 5.4e-06 55.5 43 65.1
Manes.12G158900 Manihot esculenta HOM05D006246 ORTHO05D007932 5.4e-06 55.5 48 64.6
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 7.0e-06 55.1 35 71.4


User provided reference genes

Program Settings