Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 9.5e-141 503.4 245 100.0
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.2e-81 306.2 167 87.4
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.8e-78 294.3 164 86.6
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.0e-74 283.1 161 84.5
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.6e-71 273.5 168 81.0
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 2.7e-71 272.7 169 78.7
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 2.7e-71 272.7 170 78.8
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 4.7e-71 271.9 165 79.4
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 2.3e-70 269.6 168 78.0
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.3e-70 269.6 165 78.2
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 4.0e-70 268.9 165 78.2
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.2e-70 268.5 168 77.4
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 6.7e-70 268.1 168 78.0
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.5e-69 266.9 168 76.8
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.0e-69 266.5 171 75.4
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 3.3e-69 265.8 169 76.9
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 4.4e-69 265.4 166 77.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 5.7e-69 265.0 168 76.8
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 5.7e-69 265.0 170 75.3
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 7.5e-69 264.6 168 76.8
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 7.5e-69 264.6 168 76.8
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 7.5e-69 264.6 168 76.8
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 9.7e-69 264.2 168 75.0
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 9.7e-69 264.2 171 77.2
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.3e-68 263.8 169 76.3
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.3e-68 263.8 169 76.3
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.3e-68 263.8 171 77.2
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.3e-68 263.8 165 77.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.7e-68 263.5 168 76.2
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.7e-68 263.5 170 77.1
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.7e-68 263.5 170 75.9
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 2.8e-68 262.7 168 76.2
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.8e-68 262.7 169 76.3
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.8e-68 262.7 170 75.9
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 3.7e-68 262.3 170 73.5
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.7e-68 262.3 170 77.1
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 3.7e-68 262.3 167 76.6
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 4.8e-68 261.9 170 75.3
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 4.8e-68 261.9 167 77.2
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.8e-68 261.9 167 76.6
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 6.3e-68 261.5 177 72.9
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.1e-67 260.8 170 74.7
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.1e-67 260.8 170 75.9
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.4e-67 260.4 170 75.3
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.4e-67 260.4 166 75.3
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.4e-67 260.4 167 77.2
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 1.4e-67 260.4 170 75.9
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.8e-67 260.0 167 76.6
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.8e-67 260.0 167 76.6
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 2.4e-67 259.6 170 76.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.4e-67 259.6 164 76.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.4e-67 259.6 167 74.3
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 3.1e-67 259.2 170 74.7
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 3.1e-67 259.2 170 74.7
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 5.3e-67 258.5 169 76.3
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.0e-67 258.1 167 76.6
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 7.0e-67 258.1 166 76.5
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 7.0e-67 258.1 168 74.4
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-66 256.9 165 74.5
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.0e-66 256.5 168 73.8
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.7e-66 256.1 167 75.4
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.5e-66 255.8 175 72.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.5e-66 255.8 170 74.1
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 4.5e-66 255.4 169 72.2
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 4.5e-66 255.4 169 74.0
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.9e-66 255.0 167 75.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 5.9e-66 255.0 170 72.9
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.0e-65 254.2 174 71.3
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.3e-65 253.8 170 72.9
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.3e-65 253.8 184 69.6
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.2e-65 253.1 172 71.5
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.2e-65 253.1 167 76.6
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 3.8e-65 252.3 172 70.9
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 5.0e-65 251.9 169 72.2
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.5e-65 251.5 170 72.4
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 6.5e-65 251.5 169 72.2
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 8.5e-65 251.1 171 70.2
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.5e-64 250.4 174 71.3
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.5e-64 250.4 166 72.9
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-64 250.0 170 71.8
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.9e-64 250.0 167 73.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.5e-64 249.6 171 70.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.5e-64 249.6 170 71.8
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.5e-64 249.6 170 71.8
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.5e-64 249.6 162 75.3
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.5e-64 249.6 168 72.6
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 3.2e-64 249.2 170 68.8
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.2e-64 248.8 168 70.8
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 4.2e-64 248.8 166 71.7
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 5.5e-64 248.4 169 70.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 5.5e-64 248.4 169 70.4
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 9.4e-64 247.7 156 76.9
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-63 247.3 168 70.2
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.6e-63 246.9 180 68.3
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.1e-63 246.5 156 76.3
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.1e-63 246.5 154 78.6
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 3.6e-63 245.7 169 72.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 8.0e-63 244.6 167 70.7
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.0e-63 244.6 167 72.5
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.0e-62 244.2 166 71.7
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.0e-62 244.2 169 69.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.4e-62 243.8 173 68.8
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.8e-62 243.4 167 71.9
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 3.0e-62 242.7 173 69.9
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 5.2e-62 241.9 166 72.3
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.2e-62 241.9 154 76.0
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 5.2e-62 241.9 173 69.4
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 5.2e-62 241.9 172 69.2
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.0e-61 240.0 169 70.4
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.0e-61 240.0 169 68.6
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.6e-61 239.6 169 68.0
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 4.4e-61 238.8 219 58.9
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 5.7e-61 238.4 171 70.2
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 5.7e-61 238.4 155 73.5
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 9.8e-61 237.7 166 69.9
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.3e-60 237.3 170 68.2
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.2e-60 236.5 171 66.1
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.8e-60 236.1 167 65.9
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 3.7e-60 235.7 171 69.0
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 3.7e-60 235.7 162 70.4
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.7e-60 235.7 167 65.9
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 4.8e-60 235.3 169 67.5
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.3e-60 235.0 154 74.7
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.1e-59 234.2 165 67.9
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-59 233.8 171 69.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 3.1e-59 232.6 168 67.9
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 3.1e-59 232.6 167 70.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 7.0e-59 231.5 165 67.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.0e-57 227.6 162 64.2
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 6.5e-57 224.9 170 62.4
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 4.2e-56 222.2 152 69.7
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.6e-55 219.2 169 63.3
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.4e-54 217.2 172 60.5
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.3e-54 216.5 166 60.2
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 5.2e-54 215.3 171 60.2
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.9e-48 196.8 136 69.9
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.8e-43 180.3 115 76.5
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.2e-43 179.5 117 76.1
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.4e-43 178.7 111 76.6
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.7e-42 176.4 114 76.3
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 5.9e-42 175.3 184 48.4
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-41 174.5 116 72.4
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-41 174.5 116 72.4
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 6.6e-41 171.8 117 74.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 6.8e-38 161.8 166 48.8
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 4.6e-34 149.1 86 77.9
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.8e-34 148.3 104 70.2
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.0e-33 145.6 97 73.2
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.3e-32 142.9 99 71.7
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-25 120.9 96 65.6
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.9e-24 117.1 157 40.1
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.5e-24 116.7 59 86.4
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.2e-21 107.8 105 56.2
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.8e-20 102.8 125 44.8
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.2e-19 99.8 171 38.6
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.3e-17 93.6 116 43.1
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.9e-16 90.5 116 49.1
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 9.6e-16 88.2 52 78.8
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.4e-14 83.6 52 76.9
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.4e-14 83.6 57 68.4
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.3e-12 77.8 50 74.0
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-11 72.4 90 38.9
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.4e-06 57.8 43 62.8
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 9.0e-06 55.1 67 47.8


User provided reference genes

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