Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 3.2e-278 961.1 473 100.0
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 1.7e-130 470.3 473 54.1
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 3.8e-130 469.2 473 53.5
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 1.5e-129 467.2 473 53.3
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 1.8e-127 460.3 471 51.8
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 3.4e-126 456.1 473 53.1
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 5.8e-126 455.3 471 52.9
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 1.4e-124 450.7 473 52.4
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.8e-124 450.3 473 51.0
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 9.2e-124 448.0 482 51.0
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 2.0e-123 446.8 477 52.2
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 2.0e-123 446.8 473 51.0
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.3e-122 444.1 476 52.1
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.7e-122 443.7 480 50.8
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 5.0e-122 442.2 473 50.5
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.5e-121 440.7 480 50.6
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 4.3e-121 439.1 473 50.1
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.6e-120 437.2 470 50.6
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 3.6e-120 436.0 478 50.8
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 3.6e-120 436.0 478 50.8
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 4.7e-120 435.6 470 49.6
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 4.7e-120 435.6 550 46.4
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 6.2e-120 435.3 470 51.1
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 8.0e-120 434.9 470 50.4
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 1.4e-119 434.1 443 52.4
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.3e-119 433.3 470 51.1
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.5e-118 430.6 470 49.6
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 2.6e-118 429.9 470 49.6
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 7.5e-118 428.3 470 49.4
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.3e-117 427.6 486 50.2
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 6.4e-117 425.2 477 50.1
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 1.4e-116 424.1 473 49.0
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 1.4e-116 424.1 471 51.0
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 1.9e-116 423.7 473 51.4
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 2.4e-116 423.3 476 49.4
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 7.0e-116 421.8 471 50.3
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.2e-115 421.0 473 48.8
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.6e-115 420.6 473 48.8
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 1.6e-115 420.6 471 50.1
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 2.1e-115 420.2 476 48.9
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 2.1e-115 420.2 478 49.4
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 2.1e-115 420.2 471 48.6
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 6.0e-115 418.7 310 71.3
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 7.8e-115 418.3 470 49.6
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 1.0e-114 417.9 473 50.7
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.3e-114 417.5 478 48.5
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.0e-114 416.4 474 49.8
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 3.9e-114 416.0 473 48.0
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 6.6e-114 415.2 476 49.6
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.5e-113 414.1 462 49.1
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.9e-113 413.7 470 48.7
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 3.3e-113 412.9 473 48.6
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 5.6e-113 412.1 471 47.8
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 5.6e-113 412.1 482 49.6
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 4.7e-112 409.1 473 47.8
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 4.7e-112 409.1 471 48.0
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.4e-111 407.5 451 50.8
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 3.1e-111 406.4 473 48.0
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 4.0e-111 406.0 472 48.3
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 1.2e-110 404.4 473 48.2
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 3.4e-110 402.9 470 46.6
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 9.2e-108 394.8 468 48.1
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 1.0e-106 391.3 473 47.1
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.0e-106 391.3 470 46.4
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 6.6e-106 388.7 465 47.7
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 8.6e-106 388.3 474 45.6
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 8.6e-106 388.3 465 47.7
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 8.6e-106 388.3 465 47.7
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 1.1e-105 387.9 465 48.0
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.5e-105 387.5 465 48.0
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 7.3e-105 385.2 480 46.2
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 3.6e-104 382.9 470 47.2
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 6.2e-104 382.1 471 46.1
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 1.8e-103 380.6 430 49.8
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 2.6e-102 376.7 421 51.5
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 4.4e-102 375.9 472 44.7
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 1.7e-101 374.0 474 44.5
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 2.2e-101 373.6 484 45.9
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 5.4e-100 369.0 467 45.4
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 9.2e-100 368.2 470 45.1
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 1.2e-99 367.9 474 45.8
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 2.1e-99 367.1 464 45.9
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.1e-99 367.1 469 44.8
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 4.6e-99 365.9 465 45.2
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 3.3e-97 359.8 471 43.7
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 4.3e-97 359.4 330 57.3
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 5.6e-97 359.0 310 59.7
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 3.6e-96 356.3 471 44.4
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.1e-95 354.8 470 44.3
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.1e-95 354.8 470 44.0
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 1.2e-94 351.3 422 46.4
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 5.8e-94 349.0 309 55.7
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 2.2e-93 347.1 477 43.8
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 2.2e-93 347.1 406 48.8
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 2.9e-93 346.7 477 43.6
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 2.4e-92 343.6 453 44.8
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 7.8e-91 338.6 473 42.1
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 4.3e-89 332.8 451 44.8
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 6.9e-87 325.5 470 40.6
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 4.9e-85 319.3 330 51.8
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 2.1e-83 313.9 423 45.9
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.5e-81 307.8 400 44.5
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 2.0e-78 297.4 376 47.6
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 4.6e-75 286.2 452 40.0
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 9.0e-71 271.9 362 44.2
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 2.0e-62 244.2 261 50.6
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 2.2e-61 240.7 391 40.9
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.5e-61 239.2 392 40.8
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.9e-60 237.7 309 43.4
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 5.5e-60 236.1 383 40.7
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 6.5e-53 212.6 469 31.6
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 2.5e-52 210.7 403 35.0
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 3.9e-50 203.4 224 43.3
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.2e-38 165.2 214 45.3
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 4.2e-36 156.8 332 35.2
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 7.2e-36 156.0 303 31.7
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 2.0e-33 147.9 88 78.4
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 2.8e-32 144.1 226 35.0
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 5.3e-31 139.8 189 46.6
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 1.2e-30 138.7 192 44.8
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 2.7e-30 137.5 186 44.6
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 5.9e-30 136.3 192 42.7
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 8.0e-27 125.9 167 49.7
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.6e-25 120.9 81 69.1
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.7e-24 117.1 81 61.7
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.4e-23 115.2 81 60.5
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 3.1e-23 114.0 387 26.9
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 2.7e-22 110.9 176 41.5
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 4.5e-22 110.2 142 47.2
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 2.9e-21 107.5 78 64.1
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 2.9e-21 107.5 78 64.1
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 3.8e-21 107.1 78 64.1
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 1.5e-20 105.1 216 31.0
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.2e-19 102.1 160 35.0
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 4.9e-16 90.1 53 79.2
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 9.2e-15 85.9 57 63.2
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 6.0e-06 56.6 42 57.1
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 6.0e-06 56.6 42 57.1
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 6.0e-06 56.6 42 54.8
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 7.8e-06 56.2 150 26.7


User provided reference genes

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