Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.2e-266 922.9 592 100.0
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.3e-140 503.4 577 64.5
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 4.3e-139 499.2 582 65.5
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.0e-135 488.0 592 64.9
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 3.7e-98 363.2 592 48.0
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.3e-82 311.6 602 41.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.7e-82 311.2 602 39.0
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 3.7e-82 310.1 604 43.9
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 3.2e-73 280.4 602 36.9
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 9.2e-73 278.9 600 42.2
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 3.6e-69 266.9 592 39.2
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 3.4e-67 260.4 600 41.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.1e-61 241.1 624 30.4
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.8e-60 238.0 585 39.1
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.0e-60 236.9 642 34.4
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 3.5e-56 223.8 595 31.1
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 4.6e-56 223.4 586 35.5
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 4.6e-56 223.4 635 29.4
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 6.0e-56 223.0 656 32.3
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.0e-55 222.2 581 32.5
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 2.3e-55 221.1 601 31.6
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 8.7e-55 219.2 624 29.6
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 1.9e-54 218.0 625 36.5
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 2.5e-54 217.6 622 32.5
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.3e-53 215.3 622 32.3
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.6e-53 214.9 594 35.0
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.8e-52 211.5 590 34.9
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 5.3e-52 209.9 829 30.3
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 6.9e-52 209.5 595 35.8
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 1.2e-51 208.8 625 34.4
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 1.7e-50 204.9 614 31.3
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.9e-50 204.1 589 36.5
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.9e-50 204.1 610 29.0
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 4.9e-50 203.4 594 30.0
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.1e-49 202.2 261 46.7
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.4e-49 201.8 720 30.7
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.7e-48 197.6 591 31.1
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 3.5e-48 197.2 596 29.7
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.0e-47 195.7 604 29.3
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.8e-47 194.9 606 28.7
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.5e-46 191.8 592 32.9
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 9.6e-46 189.1 610 29.7
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.3e-45 188.7 591 29.9
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.8e-44 184.9 589 34.5
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.2e-43 182.2 585 38.5
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.6e-43 181.0 582 31.1
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 5.8e-43 179.9 589 38.4
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.7e-42 178.3 622 35.2
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.2e-42 177.9 616 29.9
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 4.9e-42 176.8 649 35.9
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.1e-41 175.6 596 32.9
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.9e-41 174.9 593 32.7
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.9e-41 174.9 622 35.4
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 2.5e-41 174.5 625 27.8
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 7.1e-41 172.9 602 33.7
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 4.6e-40 170.2 569 32.3
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 6.0e-40 169.9 588 30.3
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.0e-39 167.5 614 33.4
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.9e-38 164.9 654 29.8
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 2.1e-37 161.4 272 39.7
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 8.2e-37 159.5 592 30.7
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.1e-36 157.5 591 28.1
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 4.1e-36 157.1 607 27.5
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.2e-35 155.6 588 33.0
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 4.5e-35 153.7 584 32.9
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 7.6e-35 152.9 588 33.8
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.1e-33 149.1 592 30.1
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-33 147.9 591 27.2
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.5e-33 147.9 591 27.2
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 5.5e-33 146.7 588 32.5
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.2e-32 145.6 646 25.7
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.7e-32 144.4 588 32.8
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.9e-32 142.9 588 26.9
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 1.0e-31 142.5 593 26.3
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.3e-31 142.1 588 32.8
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.8e-31 141.7 596 29.0
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.3e-31 141.4 207 42.5
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 6.7e-31 139.8 599 29.2
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.1e-30 139.0 617 26.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.3e-29 135.6 726 24.1
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.4e-28 132.1 641 28.9
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 6.9e-28 129.8 596 28.9
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 9.0e-28 129.4 234 38.9
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 3.4e-27 127.5 662 25.4
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 5.9e-27 126.7 729 29.6
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.0e-26 125.9 599 29.2
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.0e-26 125.9 622 23.3
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 2.2e-26 124.8 665 29.0
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 2.9e-26 124.4 606 25.1
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.9e-25 121.7 606 29.7
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.9e-25 121.7 581 30.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 4.6e-24 117.1 596 27.7
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 3.9e-23 114.0 660 27.9
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.1e-22 112.5 382 27.0
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.5e-22 112.1 599 31.6
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 4.3e-22 110.5 265 34.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 1.8e-20 105.1 592 24.8
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 1.5e-19 102.1 603 27.7
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.5e-19 100.5 283 28.6
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 2.9e-18 97.8 282 29.1
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 2.9e-18 97.8 282 29.1
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 5.0e-18 97.1 587 30.2
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 4.2e-17 94.0 191 34.6
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 5.5e-17 93.6 589 35.7
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 7.9e-16 89.7 589 27.2
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.0e-14 85.1 247 26.7
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.6e-14 84.7 212 32.1
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 5.7e-14 83.6 216 30.1
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 5.7e-14 83.6 477 23.7
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 2.2e-13 81.6 587 25.6
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 2.2e-13 81.6 668 23.1
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.2e-13 81.6 139 38.8
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 3.7e-13 80.9 605 22.1
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 4.8e-13 80.5 274 27.4
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 8.2e-13 79.7 131 39.7
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 8.2e-13 79.7 415 23.9
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 2.4e-12 78.2 281 28.1
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 4.1e-12 77.4 151 35.8
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 2.6e-11 74.7 599 26.2
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 2.6e-11 74.7 137 38.0
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.0e-10 72.8 260 25.8
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 2.2e-10 71.6 168 30.4
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 6.5e-10 70.1 204 30.9
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 6.5e-10 70.1 186 32.8
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 8.5e-10 69.7 122 37.7
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 5.5e-09 67.0 259 27.4
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 9.4e-09 66.2 596 30.0
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 9.4e-09 66.2 149 37.6
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.2e-08 65.9 95 43.2
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 1.4e-07 62.4 675 23.6
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.4e-07 62.4 152 34.2
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 3.0e-07 61.2 220 26.8
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 1.5e-06 58.9 280 22.9
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 4.4e-06 57.4 171 29.2
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 4.4e-06 57.4 282 23.4


User provided reference genes

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