Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.2e-193 678.3 359 100.0
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.8e-170 601.7 359 90.3
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-160 570.1 372 84.7
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.0e-151 538.9 435 70.8
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.5e-142 509.2 354 77.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 4.3e-142 508.4 363 77.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.1e-140 503.8 365 76.4
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-139 500.4 387 70.3
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.7e-139 497.7 387 70.0
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.7e-139 497.7 387 70.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.4e-137 493.4 373 73.7
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.6e-136 490.0 360 74.7
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 7.9e-136 487.6 369 72.6
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.3e-135 486.1 360 75.3
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.3e-132 474.9 345 74.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.7e-130 469.9 392 68.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 2.9e-130 469.2 359 71.3
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.1e-129 467.2 346 73.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.6e-128 463.4 390 68.2
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.9e-127 458.8 378 70.6
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.1e-126 457.2 359 70.5
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 7.4e-126 454.5 375 69.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.8e-124 449.9 375 68.3
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 4.1e-124 448.7 355 70.1
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 7.0e-124 448.0 387 68.5
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 7.0e-124 448.0 352 71.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.5e-123 445.3 376 67.8
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-122 443.7 376 67.6
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.2e-122 443.0 345 69.9
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.9e-122 442.6 378 66.1
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.5e-121 438.3 321 73.5
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.2e-120 437.2 376 66.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-120 437.2 376 66.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-115 419.9 375 64.8
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.0e-115 419.9 386 62.7
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 4.5e-115 418.7 375 64.5
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 5.9e-115 418.3 388 61.6
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-114 416.8 363 65.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.7e-114 416.8 291 76.6
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.7e-114 416.8 368 66.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.9e-113 413.3 351 67.2
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 7.2e-113 411.4 356 65.4
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 3.0e-111 406.0 386 60.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.2e-111 405.2 377 63.4
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 6.8e-111 404.8 362 63.8
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.2e-110 404.1 361 66.8
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 3.4e-110 402.5 421 56.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 9.8e-110 401.0 366 64.8
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.1e-108 396.0 372 63.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 3.1e-108 396.0 361 65.9
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.2e-107 394.0 418 57.4
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 7.7e-107 391.3 388 58.0
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.3e-106 390.6 340 66.5
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.9e-106 389.4 374 59.6
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.2e-105 384.8 373 62.2
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.6e-104 383.6 421 57.7
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.6e-104 383.6 368 61.1
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 2.8e-104 382.9 396 58.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 6.1e-104 381.7 394 58.4
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 8.0e-104 381.3 413 56.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.5e-102 377.1 471 49.0
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 5.7e-102 375.2 377 59.7
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.3e-101 374.0 369 62.6
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.7e-101 373.6 425 55.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.2e-101 373.2 382 58.6
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 6.3e-101 371.7 369 59.6
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 4.1e-100 369.0 424 55.9
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 4.1e-100 369.0 376 57.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.7e-98 363.6 467 48.4
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 3.9e-98 362.5 371 60.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 3.9e-98 362.5 446 52.2
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 9.5e-97 357.8 499 45.9
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.8e-96 356.3 499 45.7
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 8.0e-96 354.8 343 62.1
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.2e-94 350.9 356 60.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.0e-94 350.1 319 62.7
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.7e-93 345.9 426 51.6
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.7e-93 345.9 334 62.6
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 4.9e-93 345.5 369 58.3
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 4.9e-93 345.5 452 51.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 8.3e-93 344.7 342 59.4
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.1e-92 344.4 377 56.0
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.2e-92 342.8 383 57.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.0e-91 338.6 369 58.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.0e-90 336.3 368 54.9
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 8.6e-90 334.7 339 60.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 5.6e-89 332.0 459 48.8
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.2e-88 330.9 491 46.2
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.8e-88 329.7 378 53.4
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 4.7e-88 328.9 361 55.4
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 8.0e-88 328.2 461 47.7
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.1e-87 327.8 489 47.6
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.4e-87 327.4 384 56.8
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 5.2e-87 325.5 462 47.2
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.5e-86 323.9 461 47.3
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.5e-86 323.9 341 58.7
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 2.0e-86 323.6 458 47.8
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 4.4e-86 322.4 383 54.3
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.7e-85 319.3 485 45.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.9e-85 318.9 374 54.5
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 6.4e-85 318.5 456 47.6
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.9e-84 317.0 473 45.9
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.3e-82 310.8 464 45.9
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.9e-82 309.3 423 48.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 5.6e-81 305.4 371 54.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 2.8e-80 303.1 483 44.5
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.1e-79 299.7 354 55.6
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 5.2e-79 298.9 344 54.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.7e-77 293.9 327 53.8
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.0e-74 284.6 400 49.0
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.3e-74 284.3 277 63.5
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.0e-74 283.1 334 53.0
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.1e-74 282.3 266 62.8
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-72 276.9 318 52.2
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.1e-72 275.0 309 58.6
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.2e-67 261.2 343 50.1
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-61 240.7 307 53.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.9e-61 239.2 431 40.6
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 8.4e-61 238.4 319 51.4
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.6e-59 234.2 431 44.3
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 8.7e-58 228.4 367 46.3
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.1e-57 228.0 386 41.5
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 7.3e-57 225.3 342 46.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.2e-56 222.2 264 54.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.2e-53 213.8 376 44.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 6.7e-50 202.2 375 44.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.3e-42 177.2 128 71.9
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 3.0e-42 176.8 332 42.2
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.5e-33 147.9 258 42.2
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.2e-28 129.8 154 53.2
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.4e-26 124.8 76 84.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.1e-25 121.7 355 36.1
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.1e-23 115.2 78 73.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.5e-21 105.5 71 71.8
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.1e-20 105.1 253 36.0
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.1e-19 100.9 65 70.8
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.7e-19 100.5 64 75.0
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 4.7e-19 99.8 64 75.0
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.9e-19 99.0 83 69.9
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.8e-18 97.8 286 31.5
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-16 91.3 66 68.2
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 4.8e-16 89.7 92 53.3
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.2e-16 89.0 56 75.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.0e-14 84.3 120 46.7
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 5.9e-14 82.8 164 37.8
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.9e-14 82.8 194 39.7
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 4.8e-08 63.2 52 67.3
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.4e-07 61.6 240 34.6
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-07 61.6 52 65.4
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-07 61.6 52 65.4
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-07 61.6 52 65.4
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-07 61.6 52 65.4
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.8e-07 61.2 52 65.4
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 4.1e-07 60.1 52 63.5
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 4.5e-06 56.6 101 44.6
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.9e-06 56.2 52 61.5


User provided reference genes

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