Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 8.7e-193 676.8 338 100.0
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.6e-149 532.3 338 81.4
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.4e-134 481.5 341 74.5
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 3.6e-130 468.8 286 82.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.0e-121 439.1 338 66.6
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.7e-119 432.2 338 66.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 6.4e-119 431.4 339 64.9
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.2e-117 427.2 294 71.1
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.6e-117 426.8 275 74.9
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.0e-117 426.4 274 73.7
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.7e-117 426.0 276 72.8
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 5.9e-117 424.9 275 73.5
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 1.0e-116 424.1 338 63.6
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.3e-116 423.7 290 71.0
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 5.0e-116 421.8 275 73.5
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 7.3e-115 417.9 275 71.6
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.1e-114 416.4 293 69.6
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.8e-114 416.0 274 73.4
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 3.6e-114 415.6 274 71.9
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.4e-113 413.7 274 73.0
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 8.9e-113 411.0 276 71.4
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 4.1e-110 402.1 274 72.3
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 9.2e-110 401.0 256 72.3
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.0e-109 399.8 276 69.6
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.0e-108 397.5 269 71.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.7e-108 396.7 277 70.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.9e-107 393.3 277 68.6
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.5e-107 392.9 292 65.4
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.3e-107 392.1 270 69.3
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 5.6e-107 391.7 276 68.8
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 5.6e-107 391.7 281 65.8
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 9.5e-107 391.0 275 68.0
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 6.2e-106 388.3 275 66.2
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 6.2e-106 388.3 280 68.6
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.3e-105 386.3 271 66.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.1e-105 386.0 275 68.7
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.5e-104 383.6 273 65.2
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 4.4e-104 382.1 285 64.6
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 5.8e-104 381.7 294 61.6
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 7.5e-104 381.3 276 66.3
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.3e-103 380.6 271 65.7
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.3e-103 380.6 274 63.1
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.7e-103 380.2 277 64.3
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.7e-103 380.2 291 63.6
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.9e-103 379.4 226 76.1
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.7e-103 379.0 297 61.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.7e-103 379.0 280 64.3
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 8.3e-103 377.9 230 77.4
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.9e-102 376.7 274 67.5
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.4e-102 376.3 282 63.5
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.4e-102 376.3 294 61.2
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.4e-102 376.3 273 65.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.1e-102 375.6 273 65.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 4.1e-102 375.6 281 63.0
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 4.1e-102 375.6 264 64.4
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 7.1e-102 374.8 288 63.5
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 9.2e-102 374.4 277 66.4
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.2e-101 374.0 264 65.2
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 2.7e-101 372.9 274 65.0
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 7.8e-101 371.3 313 57.5
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.3e-100 370.5 275 65.8
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.3e-100 370.5 282 62.8
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.9e-100 369.0 273 62.6
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 6.6e-100 368.2 273 64.8
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 8.6e-100 367.9 269 64.7
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.1e-99 367.5 273 64.8
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.1e-99 367.5 295 61.4
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 2.5e-99 366.3 271 63.1
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.1e-98 363.2 261 65.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.1e-98 363.2 271 61.3
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 2.1e-98 363.2 272 66.9
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.8e-97 360.1 272 63.2
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.3e-97 359.8 266 62.4
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.2e-97 358.6 270 64.1
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.2e-96 357.5 279 63.4
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 2.0e-96 356.7 271 61.3
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 9.9e-96 354.4 264 62.9
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 4.9e-95 352.1 295 58.6
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 8.4e-95 351.3 270 63.0
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.1e-94 350.9 299 56.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 4.1e-94 349.0 240 66.2
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 9.2e-94 347.8 270 61.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.6e-90 337.0 276 56.5
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.8e-90 336.3 231 68.8
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 8.1e-90 334.7 250 60.8
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 4.0e-89 332.4 261 57.1
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.0e-88 330.1 273 59.0
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 5.8e-88 328.6 260 56.9
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 3.8e-87 325.9 262 59.2
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 4.8e-82 308.9 275 55.3
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 9.9e-80 301.2 233 61.8
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.6e-77 293.9 261 51.3
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 3.5e-77 292.7 267 54.3
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.3e-75 286.2 257 55.3
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.3e-75 285.8 268 53.4
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 9.6e-75 284.6 267 52.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.8e-74 283.1 267 52.1
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-73 280.4 267 51.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-73 280.4 267 51.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-72 277.3 267 51.7
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-72 277.3 275 51.6
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 3.4e-72 276.2 268 50.7
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.4e-72 276.2 274 51.1
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 3.4e-72 276.2 256 53.1
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 7.6e-72 275.0 268 51.1
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.8e-71 272.7 272 50.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 6.4e-71 271.9 266 51.1
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 6.4e-71 271.9 268 50.7
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-70 270.4 266 50.8
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.4e-70 270.0 221 62.9
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.2e-70 269.2 273 50.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 9.3e-70 268.1 282 50.0
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 6.0e-69 265.4 296 48.6
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 6.5e-63 245.4 275 48.4
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 3.0e-60 236.5 231 45.0
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.0e-52 209.9 218 46.8
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.3e-50 202.2 193 50.3
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 5.3e-49 199.1 216 46.3
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 5.0e-47 192.6 250 40.0
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 3.3e-43 179.9 263 36.9
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 8.2e-42 175.3 232 41.8
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-41 174.1 258 43.4
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-40 169.1 190 47.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-40 169.1 188 46.3
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 6.5e-39 165.6 184 45.1
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.5e-38 162.5 225 42.2
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-37 161.0 189 46.0
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 4.7e-37 159.5 185 45.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 8.0e-37 158.7 180 48.3
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 8.0e-37 158.7 229 42.8
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.3e-36 157.1 189 45.0
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 4.4e-35 152.9 185 45.9
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 8.5e-31 138.7 145 47.6
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 5.5e-30 136.0 263 37.6
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 9.4e-30 135.2 161 44.1
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.1e-29 132.5 143 44.1
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.6e-27 127.1 145 45.5
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 7.5e-27 125.6 91 62.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.9e-23 113.6 185 38.9
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.9e-23 113.6 185 38.9
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.5e-19 101.3 173 34.1
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 4.4e-19 99.8 192 31.8
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.8e-17 94.4 95 51.6
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-17 94.0 62 66.1
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 2.4e-17 94.0 62 66.1
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 9.1e-17 92.0 70 61.4
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.0e-15 88.6 116 45.7
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.0e-12 77.0 99 43.4


User provided reference genes

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