Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0021300 Salix brachista HOM05D001340 ORTHO05D005342 4.6e-71 271.2 141 100.0
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 1.5e-61 239.6 148 87.2
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.8e-57 224.9 133 89.5
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 2.9e-49 198.7 120 90.8
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.2e-47 193.4 133 80.5
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 4.8e-44 181.4 191 58.1
Sabra01G0113700 Salix brachista HOM05D001340 ORTHO05D005342 2.5e-37 159.1 100 88.0
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 3.7e-36 155.2 143 65.7
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 1.2e-34 150.2 143 62.2
Sabra05G0010300 Salix brachista HOM05D001340 ORTHO05D005342 2.0e-34 149.4 89 91.0
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 1.3e-33 146.7 142 62.0
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 1.9e-32 142.9 145 61.4
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 1.9e-32 142.9 143 60.8
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-31 140.2 129 65.9
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 8.7e-30 134.0 154 56.5
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 1.5e-29 133.3 125 65.6
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 5.7e-29 131.3 135 59.3
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 5.7e-29 131.3 190 46.3
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 7.4e-29 131.0 103 68.0
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 9.7e-29 130.6 142 55.6
CSS0003239 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.2e-28 129.4 155 52.9
CSS0014814 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.2e-28 129.4 155 52.9
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 2.2e-28 129.4 155 53.5
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.7e-28 128.6 132 60.6
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 3.7e-28 128.6 151 56.3
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 1.1e-27 127.1 149 53.7
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.4e-27 126.7 132 56.8
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.4e-27 126.7 143 56.6
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 2.4e-27 125.9 139 56.8
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.4e-27 125.9 132 59.8
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.4e-27 125.9 158 49.4
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 2.4e-27 125.9 143 56.6
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 3.1e-27 125.6 150 53.3
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 4.1e-27 125.2 143 55.9
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 4.1e-27 125.2 155 49.0
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 1.2e-26 123.6 150 53.3
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.2e-26 123.6 143 53.8
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 4.5e-26 121.7 155 47.7
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 5.9e-26 121.3 142 56.3
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 5.9e-26 121.3 86 80.2
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.0e-25 120.6 142 56.3
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.0e-25 120.6 143 53.8
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.3e-25 120.2 143 55.2
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.7e-25 119.8 144 52.8
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.7e-25 119.8 139 55.4
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 6.5e-25 117.9 144 52.8
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 8.5e-25 117.5 154 51.3
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 8.5e-25 117.5 183 45.9
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 1.1e-24 117.1 143 53.8
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.1e-24 117.1 103 64.1
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 1.4e-24 116.7 140 51.4
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.4e-24 116.7 133 54.9
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.9e-24 116.3 139 54.0
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 1.9e-24 116.3 134 53.7
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 2.5e-24 115.9 143 53.8
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 3.2e-24 115.5 143 53.1
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 1.2e-23 113.6 136 55.1
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 1.2e-23 113.6 136 55.1
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 1.6e-23 113.2 142 53.5
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 1.6e-23 113.2 142 53.5
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 1.6e-23 113.2 142 53.5
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 1.6e-23 113.2 108 60.2
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 2.1e-23 112.8 143 50.3
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 2.7e-23 112.5 143 49.7
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 3.6e-23 112.1 131 50.4
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 4.6e-23 111.7 125 52.0
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 7.9e-23 110.9 131 49.6
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.0e-22 110.5 124 54.8
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.4e-22 110.2 163 47.9
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.8e-22 109.8 133 52.6
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 2.3e-22 109.4 144 51.4
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 2.3e-22 109.4 137 51.8
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 3.0e-22 109.0 143 51.0
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 3.0e-22 109.0 143 51.0
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 3.0e-22 109.0 144 52.1
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 3.0e-22 109.0 163 45.4
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 8.8e-22 107.5 80 67.5
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 8.8e-22 107.5 155 46.5
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.5e-21 106.7 157 47.8
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 2.0e-21 106.3 130 50.8
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.6e-21 105.9 102 57.8
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 1.3e-20 103.6 124 52.4
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 4.8e-20 101.7 118 51.7
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 4.8e-20 101.7 129 47.3
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 8.2e-20 100.9 162 43.2
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.1e-19 100.5 177 41.2
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 1.4e-19 100.1 103 52.4
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.4e-19 100.1 124 50.0
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.4e-19 99.4 141 46.1
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 4.1e-19 98.6 156 45.5
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 5.3e-19 98.2 107 54.2
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 5.3e-19 98.2 143 47.6
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 6.9e-19 97.8 123 49.6
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 1.2e-18 97.1 155 43.9
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.2e-18 97.1 91 58.2
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 1.5e-18 96.7 130 51.5
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 2.0e-18 96.3 157 39.5
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 2.6e-18 95.9 172 43.6
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 3.4e-18 95.5 140 47.9
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 1.7e-17 93.2 103 55.3
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.2e-17 92.8 128 50.0
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 2.9e-17 92.4 137 43.1
SEGI_40234 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 3.8e-17 92.0 80 60.0
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 3.2e-16 89.0 136 47.8
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 7.2e-16 87.8 133 43.6
BcaC06g31772 Brassica carinata HOM05D001340 ORTHO05D005342 7.2e-16 87.8 117 51.3
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 7.2e-16 87.8 112 52.7
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 1.2e-15 87.0 103 49.5
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.6e-15 86.7 112 50.9
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.0e-14 84.0 119 50.4
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 1.0e-14 84.0 60 71.7
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.4e-14 83.6 111 46.8
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 2.3e-14 82.8 81 58.0
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 5.2e-14 81.6 72 61.1
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 1.1e-13 80.5 92 54.3
PSO675G7546 Papaver somniferum HOM05D001340 ORTHO05D005342 1.1e-13 80.5 73 61.6
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 1.1e-13 80.5 104 49.0
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 4.4e-13 78.6 58 69.0
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 1.7e-12 76.6 126 43.7
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 2.8e-12 75.9 149 39.6
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 1.1e-11 73.9 96 47.9
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 3.5e-10 68.9 101 44.6
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.7e-09 66.6 65 49.2
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.2e-09 66.2 65 49.2
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 2.9e-09 65.9 65 50.8
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.9e-09 65.9 49 69.4
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 6.5e-09 64.7 49 69.4
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 6.5e-09 64.7 47 72.3
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.1e-08 63.9 159 35.2
Sabra05G0009900 Salix brachista HOM05D000779 ORTHO05D000246 1.5e-08 63.5 36 88.9
Hund23304 Selenicereus undatus HOM05D009075 ORTHO05D011069 4.2e-08 62.0 45 73.3
AUR62020511 Chenopodium quinoa HOM05D001340 ORTHO05D011069 2.1e-07 59.7 76 43.4
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 6.1e-07 58.2 49 63.3
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 2.3e-06 56.2 52 53.8
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.0e-06 55.8 88 43.2


User provided reference genes

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