Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.4e-254 882.5 440 100.0
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 3.6e-223 778.1 440 90.0
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-196 689.9 429 85.3
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 4.4e-189 664.8 433 78.5
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.8e-177 626.3 441 72.3
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 3.0e-177 625.5 443 71.6
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 3.0e-177 625.5 445 71.2
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 5.1e-177 624.8 445 71.7
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 8.7e-177 624.0 439 71.3
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.9e-176 622.9 443 71.3
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 5.6e-176 621.3 443 70.4
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 7.4e-176 620.9 443 71.3
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 8.1e-175 617.5 444 70.3
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.4e-174 616.7 441 71.2
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.0e-174 615.1 435 71.7
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.3e-174 614.8 443 70.4
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.2e-173 613.6 444 70.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.2e-173 613.6 445 69.7
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.5e-173 613.2 434 71.9
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 4.5e-173 611.7 444 70.3
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.3e-172 610.1 443 70.2
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 2.9e-172 609.0 443 68.2
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 6.4e-172 607.8 445 70.1
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 6.4e-172 607.8 444 69.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.9e-171 606.3 434 70.7
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.5e-171 605.9 444 69.6
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 5.5e-171 604.7 435 71.0
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.6e-170 603.2 444 70.7
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.1e-170 602.8 439 68.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 6.0e-170 601.3 445 69.0
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-169 600.1 445 69.7
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.9e-169 598.6 438 68.9
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.9e-169 598.6 439 68.3
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 6.7e-169 597.8 438 68.9
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.1e-168 597.0 434 69.1
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 5.6e-168 594.7 445 67.4
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.3e-167 593.6 448 66.5
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 3.7e-167 592.0 438 68.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 3.7e-167 592.0 443 66.1
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 6.2e-167 591.3 479 64.1
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.2e-165 587.0 444 66.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 4.5e-165 585.1 437 67.5
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 7.6e-165 584.3 436 68.1
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.3e-164 583.6 436 68.3
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.9e-164 581.6 445 66.7
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 8.4e-164 580.9 441 67.6
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.1e-163 580.5 441 66.9
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.4e-163 580.1 438 67.1
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 9.3e-163 577.4 435 68.3
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 9.3e-163 577.4 441 67.1
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 3.5e-162 575.5 443 65.7
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.8e-161 573.2 468 64.1
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.0e-161 572.4 452 67.0
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 5.1e-161 571.6 441 66.2
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 8.7e-161 570.9 435 66.4
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 5.7e-160 568.2 435 66.2
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 5.7e-160 568.2 435 67.6
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 7.4e-160 567.8 435 66.4
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 9.7e-160 567.4 435 66.0
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 9.7e-160 567.4 435 67.4
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.7e-159 565.5 444 64.2
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 4.8e-159 565.1 435 65.5
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.1e-158 563.9 435 65.5
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.1e-158 563.9 439 65.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.4e-158 563.5 435 66.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.4e-158 562.8 429 66.4
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 2.4e-158 562.8 435 66.0
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 6.9e-158 561.2 438 66.9
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.5e-157 558.5 437 65.7
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 2.2e-156 556.2 434 64.1
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.9e-155 553.1 421 67.2
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.9e-155 553.1 532 56.0
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.6e-154 548.9 477 61.4
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.9e-153 545.4 433 63.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.7e-153 544.7 434 63.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 2.0e-152 543.1 517 55.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.3e-152 542.3 473 60.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.3e-151 538.1 479 59.5
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.4e-150 537.0 430 62.3
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.1e-150 535.4 444 62.8
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 5.3e-150 535.0 421 65.1
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.5e-149 531.9 446 63.2
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.3e-148 530.4 436 60.6
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.2e-147 525.4 442 62.2
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.7e-144 515.0 445 60.7
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 7.4e-144 514.6 441 62.4
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.4e-142 510.4 445 60.7
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 4.5e-141 505.4 450 58.2
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.0e-140 501.9 380 68.2
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 6.1e-138 495.0 461 58.6
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 3.3e-136 489.2 429 61.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 6.3e-135 485.0 384 66.1
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.0e-132 477.6 384 64.1
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.2e-132 476.5 384 63.8
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 2.2e-132 476.5 726 41.2
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 6.1e-130 468.4 366 66.9
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 6.1e-130 468.4 381 63.8
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 6.1e-130 468.4 362 66.9
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.4e-120 436.0 429 55.9
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 4.4e-120 435.6 704 40.9
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.8e-118 430.3 299 73.2
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 3.3e-115 419.5 438 50.2
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 3.0e-113 412.9 431 48.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.2e-111 406.8 339 63.4
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.9e-108 396.4 299 67.2
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.5e-107 394.0 286 68.5
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 8.0e-106 388.3 341 59.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 4.0e-105 386.0 448 45.8
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.9e-99 367.1 441 47.2
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.5e-91 340.9 360 50.3
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.6e-82 310.8 248 65.7
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 2.1e-82 310.5 195 78.5
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.1e-78 298.1 220 70.0
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.9e-67 260.8 163 78.5
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 2.5e-67 260.4 285 53.0
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.8e-65 254.2 241 58.9
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 3.0e-60 236.9 425 33.2
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.5e-59 233.8 214 59.8
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 6.0e-53 212.6 155 65.8
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-52 211.5 131 78.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.1e-50 204.1 135 72.6
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.8e-50 203.8 444 34.5
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.9e-43 181.0 143 63.6
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.2e-40 171.8 141 64.5
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.7e-39 167.9 141 65.2
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 6.7e-36 156.0 196 48.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 2.0e-35 154.5 189 48.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.3e-35 153.3 150 51.3
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 6.3e-34 149.4 325 33.2
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-24 117.1 100 56.0
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.5e-23 112.5 112 50.9
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.6e-19 100.9 52 80.8
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.2e-15 87.8 77 58.4
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.5e-14 84.3 71 59.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 3.2e-14 84.0 72 58.3
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 3.0e-12 77.4 52 75.0
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 5.2e-12 76.6 76 51.3
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.8e-09 68.2 43 72.1
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.4e-09 67.8 85 41.2
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 5.0e-07 60.1 39 74.4
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 5.5e-06 56.6 40 65.0
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 7.2e-06 56.2 37 67.6


User provided reference genes

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