Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 1.9e-118 429.1 208 100.0
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 7.8e-19 98.2 62 75.8
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 1.4e-15 87.4 47 83.0
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 4.0e-15 85.9 46 80.4
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 4.0e-15 85.9 46 80.4
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 1.5e-14 84.0 47 78.7
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 2.6e-14 83.2 47 78.7
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 3.4e-14 82.8 47 76.6
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 4.5e-14 82.4 47 78.7
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 1.3e-13 80.9 47 74.5
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 1.7e-13 80.5 47 70.2
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 2.2e-13 80.1 46 80.4
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 74.5
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 2.2e-13 80.1 47 76.6
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 3.8e-13 79.3 47 72.3
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 3.8e-13 79.3 47 74.5
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 3.8e-13 79.3 45 77.8
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 3.8e-13 79.3 47 72.3
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 4.9e-13 79.0 47 74.5
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 8.4e-13 78.2 43 76.7
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 1.1e-12 77.8 47 72.3
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 1.1e-12 77.8 43 81.4
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 1.9e-12 77.0 47 72.3
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 1.9e-12 77.0 47 72.3
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 1.9e-12 77.0 47 76.6
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 1.9e-12 77.0 47 72.3
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 1.9e-12 77.0 47 72.3
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 2.4e-12 76.6 47 76.6
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 3.2e-12 76.3 47 74.5
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 3.2e-12 76.3 47 72.3
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 3.2e-12 76.3 47 72.3
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 3.2e-12 76.3 47 72.3
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 3.2e-12 76.3 47 74.5
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 3.2e-12 76.3 47 72.3
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 4.2e-12 75.9 43 76.7
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 4.2e-12 75.9 47 70.2
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 5.4e-12 75.5 47 70.2
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 5.4e-12 75.5 43 76.7
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 7.1e-12 75.1 43 76.7
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 9.3e-12 74.7 45 73.3
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 9.3e-12 74.7 43 74.4
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 1.2e-11 74.3 43 76.7
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 1.2e-11 74.3 44 70.5
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 1.6e-11 73.9 43 74.4
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 1.6e-11 73.9 47 70.2
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 1.6e-11 73.9 43 74.4
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 2.7e-11 73.2 39 79.5
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 3.5e-11 72.8 43 74.4
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 3.5e-11 72.8 47 70.2
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 7.9e-11 71.6 39 79.5
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.3e-10 70.9 50 68.0
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.3e-10 70.9 50 68.0
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 2.3e-10 70.1 39 79.5
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 3.0e-10 69.7 47 66.0
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 5.1e-10 68.9 65 50.8
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 6.7e-10 68.6 39 76.9
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 8.7e-10 68.2 39 74.4
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 8.7e-10 68.2 43 69.8
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 2.5e-09 66.6 39 74.4
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 2.5e-09 66.6 39 74.4
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 2.5e-09 66.6 39 74.4
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 9.6e-09 64.7 54 57.4
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 9.6e-09 64.7 54 57.4
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.3e-08 64.3 54 57.4
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 1.3e-08 64.3 47 63.8
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 2.1e-08 63.5 44 59.1
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 1.4e-07 60.8 38 68.4
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 4.0e-07 59.3 47 61.7
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 5.3e-07 58.9 43 62.8
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 2.6e-06 56.6 36 66.7


User provided reference genes

Program Settings