Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 0.0e+00 1224.9 637 100.0
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 7.1e-305 1050.0 636 87.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.5e-289 998.4 738 74.4
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.4e-273 946.0 637 78.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 4.2e-273 944.5 643 78.2
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.9e-267 924.1 633 77.9
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.7e-266 922.5 633 76.8
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.4e-263 912.9 633 77.1
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.3e-263 912.1 637 76.8
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.9e-263 911.4 627 77.8
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 3.9e-263 911.4 638 75.5
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.8e-263 910.2 633 76.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.1e-262 909.8 633 76.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.0e-262 909.1 633 75.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.7e-261 904.8 633 76.1
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 4.1e-260 901.4 629 76.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 7.0e-260 900.6 636 76.3
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.2e-259 899.8 629 75.7
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.2e-259 899.8 637 75.8
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 5.9e-259 897.5 637 75.5
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.9e-258 895.2 637 75.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.9e-258 895.2 633 75.4
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.8e-258 894.8 628 75.8
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.8e-258 894.8 633 75.0
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.1e-257 893.3 628 76.9
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.5e-257 892.9 633 75.5
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.2e-257 891.3 628 75.5
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.4e-257 890.2 633 75.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 6.1e-256 887.5 629 74.7
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.8e-255 885.9 636 74.7
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-254 883.2 633 74.6
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.2e-254 883.2 640 72.3
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.0e-254 882.5 625 74.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 4.4e-254 881.3 628 74.2
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.7e-254 880.2 631 72.7
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.2e-253 879.0 637 72.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.8e-253 877.9 629 74.7
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 8.3e-253 877.1 637 76.5
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.4e-252 875.5 633 73.8
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.1e-252 874.8 633 73.8
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 9.1e-252 873.6 637 72.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.0e-251 872.5 634 74.3
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.0e-250 870.2 638 74.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 5.0e-250 867.8 628 72.5
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.1e-249 866.7 621 73.1
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 5.5e-249 864.4 633 72.8
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.7e-248 862.1 601 75.5
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.6e-248 861.7 634 71.6
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 6.1e-248 860.9 639 71.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 6.1e-248 860.9 634 71.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 2.3e-247 859.0 637 71.1
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.0e-247 858.6 633 72.4
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 4.0e-247 858.2 636 70.8
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 3.4e-246 855.1 637 72.2
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.4e-246 854.7 637 72.4
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 4.4e-246 854.7 637 72.4
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 8.3e-245 850.5 637 71.9
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 3.1e-244 848.6 739 64.7
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 9.1e-244 847.0 623 71.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 8.6e-242 840.5 627 71.5
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.8e-240 835.5 629 70.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 8.0e-240 833.9 627 71.0
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 4.0e-239 831.6 602 73.3
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 6.8e-239 830.9 627 71.1
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 8.9e-239 830.5 634 71.1
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.0e-238 829.3 625 71.0
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.6e-238 828.9 630 71.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 3.4e-238 828.6 629 71.1
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 9.8e-238 827.0 626 70.4
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.3e-237 826.6 630 70.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.3e-237 826.6 623 70.8
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.2e-237 825.9 629 70.9
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.2e-237 825.9 605 72.9
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.8e-237 825.5 629 70.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.8e-237 825.5 633 69.2
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 3.7e-237 825.1 627 70.8
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 4.9e-237 824.7 629 70.9
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.4e-236 822.4 625 70.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 5.4e-236 821.2 629 69.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.4e-236 821.2 630 70.2
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.0e-236 820.8 637 69.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.6e-235 819.7 628 70.7
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.6e-235 819.7 633 69.2
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.0e-235 819.3 628 70.4
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 2.0e-235 819.3 629 69.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.0e-235 819.3 624 71.0
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 4.5e-235 818.1 613 71.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.3e-234 815.8 613 71.5
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 8.6e-234 813.9 629 69.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 8.6e-234 813.9 544 77.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-232 809.7 628 68.9
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.6e-232 808.5 627 69.2
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.4e-231 806.6 633 68.1
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.4e-231 806.6 628 69.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 5.2e-231 804.7 649 67.2
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.0e-230 802.7 613 70.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 2.9e-229 798.9 629 69.3
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.7e-229 798.5 633 67.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.9e-229 798.1 633 68.7
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 8.3e-229 797.3 602 70.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.3e-229 797.3 631 68.8
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.4e-228 795.8 602 70.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-228 795.8 631 68.1
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 3.2e-228 795.4 635 67.2
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 4.1e-228 795.0 633 68.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.2e-227 793.5 631 68.0
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.2e-227 793.5 633 68.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.7e-226 789.6 635 67.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.6e-226 787.3 635 68.0
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-225 786.9 633 67.9
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.9e-225 786.2 630 68.3
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 6.0e-219 764.6 635 66.1
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.9e-217 759.6 547 73.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.6e-214 749.2 638 65.7
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.8e-208 729.2 615 64.6
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.8e-207 726.5 602 64.5
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 2.2e-205 719.5 624 62.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 4.3e-201 705.3 629 61.0
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.2e-198 697.2 646 62.1
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.5e-193 680.2 623 60.7
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-182 642.9 433 78.1
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.7e-179 632.9 483 70.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.7e-177 625.2 540 63.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.2e-174 617.5 507 67.7
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.5e-169 599.7 514 63.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.1e-154 548.9 372 76.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 5.1e-154 548.9 565 56.6
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 5.3e-151 538.9 415 71.1
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.8e-141 506.1 613 53.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 7.0e-135 485.3 554 49.3
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.5e-134 483.0 400 66.2
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 8.9e-122 441.8 358 66.8
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.2e-120 437.2 359 68.0
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.5e-113 414.5 275 79.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 3.0e-101 373.6 555 41.6
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-91 341.7 232 78.9
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 6.2e-91 339.3 592 38.9
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 9.3e-87 325.5 266 64.7
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 6.6e-77 292.7 210 71.9
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.6e-70 271.6 292 55.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 6.5e-56 223.0 304 43.4
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.7e-54 217.6 278 41.4
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.2e-41 175.6 288 39.9
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 5.9e-41 173.3 127 67.7
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.0e-40 172.6 169 58.0
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.1e-30 138.3 139 56.1
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.0e-29 134.4 186 46.2
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 8.2e-27 126.3 111 60.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 5.9e-25 120.2 109 60.6
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.7e-22 110.5 205 41.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.7e-16 92.0 99 57.6
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.9e-15 88.6 52 80.8
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.9e-15 88.6 52 80.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.6e-14 85.5 47 83.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 8.0e-14 83.2 54 77.8
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.7e-12 77.0 65 64.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 6.3e-11 73.6 74 55.4
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 8.3e-11 73.2 74 55.4
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 4.1e-10 70.9 74 54.1
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.7e-08 65.5 57 56.1
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 6.6e-08 63.5 75 53.3
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 1.1e-07 62.8 57 47.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.6e-06 58.9 30 83.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.6e-06 58.9 30 83.3
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 4.7e-06 57.4 85 43.5


User provided reference genes

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