Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 2.5e-218 761.9 407 100.0
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.1e-133 480.7 419 67.5
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.0e-96 355.1 401 57.9
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 2.6e-90 336.7 470 49.8
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.3e-54 218.0 399 40.9
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 9.6e-45 185.3 210 52.4
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 6.2e-44 182.6 205 49.8
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.5e-42 177.9 390 36.2
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 4.4e-42 176.4 209 48.8
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 5.8e-42 176.0 208 47.1
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 7.6e-42 175.6 414 34.1
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 2.1e-39 167.5 175 50.3
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 7.8e-39 165.6 399 34.6
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.9e-38 163.3 184 47.8
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.9e-38 163.3 184 47.8
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.9e-38 163.3 184 47.8
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.3e-37 160.2 192 51.0
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.3e-37 159.8 416 33.7
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.3e-37 159.1 416 33.4
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 9.6e-37 158.7 179 49.7
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 3.6e-36 156.8 401 33.7
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.8e-36 156.4 211 43.6
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 4.8e-36 156.4 184 49.5
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 8.1e-36 155.6 180 52.8
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.1e-36 155.6 184 47.3
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 8.1e-36 155.6 180 50.6
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.1e-35 155.2 209 45.0
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.4e-35 154.8 186 47.3
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 3.1e-35 153.7 186 48.9
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 4.0e-35 153.3 184 47.3
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 5.3e-35 152.9 182 47.8
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 5.3e-35 152.9 194 44.8
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 6.9e-35 152.5 191 45.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 9.0e-35 152.1 417 32.9
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.5e-34 151.4 176 50.0
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.5e-34 151.4 180 48.3
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 5.8e-34 149.4 184 46.2
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.6e-34 149.1 184 46.2
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 9.9e-34 148.7 180 47.8
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.3e-33 148.3 192 47.9
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.2e-33 147.5 206 43.7
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 2.9e-33 147.1 203 46.8
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 3.8e-33 146.7 190 47.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.9e-33 146.4 184 46.2
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 6.4e-33 146.0 185 45.4
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.4e-32 144.8 163 50.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.4e-32 144.8 397 32.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.4e-32 144.1 192 45.3
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 3.2e-32 143.7 190 43.7
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.4e-32 142.9 343 33.5
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 7.1e-32 142.5 306 34.6
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 9.3e-32 142.1 187 47.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.2e-31 141.7 186 46.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.2e-31 141.7 189 49.2
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.2e-31 141.7 189 43.4
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.2e-31 141.7 220 41.4
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.1e-31 141.0 188 44.7
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.1e-31 141.0 430 31.6
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.1e-31 141.0 197 42.1
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 3.5e-31 140.2 212 42.9
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 3.5e-31 140.2 217 40.6
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.5e-31 140.2 208 43.8
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 3.5e-31 140.2 160 53.1
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 7.8e-31 139.0 138 55.1
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.0e-30 138.7 177 44.1
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.0e-30 138.7 191 42.9
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.3e-30 138.3 201 41.8
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.7e-30 137.9 182 45.1
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.7e-30 137.9 188 44.1
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.3e-30 137.5 192 46.4
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 3.9e-30 136.7 184 48.4
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 5.1e-30 136.3 191 44.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 6.6e-30 136.0 202 41.6
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.5e-29 134.8 191 45.0
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.5e-29 134.8 394 31.5
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.9e-29 134.4 205 41.0
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.5e-29 134.0 203 41.4
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.3e-29 133.7 201 39.8
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.3e-28 131.7 178 44.4
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.8e-28 130.6 206 40.3
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.8e-27 127.9 202 40.1
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.4e-27 127.5 203 39.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 3.1e-27 127.1 215 39.1
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 5.3e-27 126.3 435 30.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 6.9e-27 125.9 187 44.9
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-26 125.2 192 40.6
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 4.5e-26 123.2 185 41.6
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 5.8e-26 122.9 181 43.6
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 4.9e-25 119.8 178 42.7
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.4e-24 117.5 192 38.5
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 2.4e-24 117.5 189 39.2
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.2e-24 117.1 148 43.9
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.2e-24 117.1 338 31.1
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.0e-22 112.1 399 30.3
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.8e-22 111.3 136 44.1
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.3e-22 110.9 195 36.4
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.9e-22 110.2 195 43.6
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 5.1e-22 109.8 212 34.0
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 7.4e-21 105.9 188 37.8
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 9.6e-21 105.5 161 39.1
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.3e-20 105.1 169 36.1
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.7e-20 103.6 166 36.7
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 4.8e-20 103.2 189 37.6
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 8.1e-20 102.4 189 38.6
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 2.4e-19 100.9 197 35.0
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.2e-18 98.6 209 31.6
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.5e-18 98.2 197 37.6
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.4e-18 97.1 231 32.9
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 5.8e-18 96.3 200 33.5
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.0e-17 95.5 198 36.9
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.3e-17 95.1 164 40.9
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 3.8e-17 93.6 185 35.7
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.9e-17 93.2 214 35.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.9e-16 91.3 198 33.8
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.5e-16 90.9 163 32.5
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 5.5e-16 89.7 119 46.2
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.5e-16 89.7 209 32.1
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 7.1e-16 89.4 177 34.5
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.1e-15 87.8 198 33.3
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 4.6e-15 86.7 186 31.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 6.0e-15 86.3 125 48.0
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.0e-14 85.5 178 35.4
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.3e-14 85.1 193 32.1
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.8e-14 84.7 204 34.3
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 8.7e-14 82.4 171 31.6
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.5e-13 81.6 191 33.0
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.9e-13 81.3 207 32.4
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 2.5e-13 80.9 181 37.0
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.3e-13 80.5 207 31.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 4.3e-13 80.1 114 43.9
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.7e-13 79.7 173 32.4
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.3e-12 78.6 140 34.3
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.6e-12 78.2 207 32.4
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 8.2e-12 75.9 176 35.2
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 8.2e-12 75.9 168 32.7
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.1e-11 75.5 197 31.5
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 4.1e-11 73.6 177 33.9
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.6e-10 70.9 131 36.6
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 7.6e-10 69.3 147 34.7
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 1.0e-09 68.9 186 30.6
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 6.5e-09 66.2 97 44.3
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.1e-08 65.5 218 28.9
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 3.2e-08 63.9 195 28.7
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 5.5e-08 63.2 108 41.7
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 2.3e-06 57.8 231 26.4
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.0e-06 57.4 135 32.6
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 5.1e-06 56.6 197 25.4
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 8.7e-06 55.8 197 25.4


User provided reference genes

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