Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.1e-84 316.6 158 100.0
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.3e-50 203.4 119 85.7
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.3e-50 203.4 124 82.3
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.8e-50 201.8 110 92.7
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 3.8e-50 201.8 119 84.9
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.8e-50 201.8 116 87.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 3.8e-50 201.8 116 87.1
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 6.5e-50 201.1 110 92.7
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-49 200.3 126 81.7
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.5e-49 199.1 123 82.1
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.2e-49 198.7 119 83.2
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 4.2e-49 198.4 123 81.3
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.2e-49 197.6 110 90.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.2e-48 196.8 110 89.1
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.2e-48 196.8 110 88.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.2e-48 196.8 110 89.1
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.2e-48 196.8 110 90.0
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.2e-48 196.8 135 71.9
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.1e-48 196.1 120 81.7
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.1e-48 196.1 130 77.7
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.1e-48 196.1 110 89.1
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.6e-48 195.3 110 88.2
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.6e-48 195.3 110 86.4
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.0e-47 193.7 121 81.8
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.0e-47 193.7 110 86.4
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.0e-47 193.7 110 88.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.0e-47 193.7 110 87.3
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.4e-47 193.4 110 86.4
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.4e-47 193.4 130 76.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.8e-47 193.0 128 75.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.8e-47 193.0 128 73.4
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.8e-47 193.0 110 84.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.8e-47 193.0 123 80.5
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.3e-47 192.6 110 87.3
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.0e-47 192.2 110 85.5
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 3.0e-47 192.2 110 87.3
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 8.8e-47 190.7 110 86.4
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.2e-46 190.3 110 84.5
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-46 189.9 128 72.7
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-46 189.5 120 76.7
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-46 189.5 110 83.6
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.0e-46 189.5 123 75.6
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.4e-46 188.7 110 85.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.4e-46 188.7 128 72.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 3.4e-46 188.7 134 67.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 5.7e-46 188.0 110 80.9
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.7e-46 188.0 114 80.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 5.7e-46 188.0 110 83.6
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.7e-46 188.0 128 71.9
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 7.5e-46 187.6 110 81.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 7.5e-46 187.6 110 83.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 9.8e-46 187.2 105 87.6
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 9.8e-46 187.2 131 67.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 9.8e-46 187.2 131 67.2
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.3e-45 186.8 123 74.0
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.3e-45 186.8 131 68.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.7e-45 186.4 110 79.1
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.2e-45 186.0 114 79.8
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.2e-45 186.0 123 75.6
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.8e-45 185.7 131 67.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.8e-45 185.7 131 67.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.8e-45 185.7 131 67.2
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.8e-45 185.7 110 82.7
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 3.7e-45 185.3 110 78.2
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 3.7e-45 185.3 110 78.2
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.8e-45 184.9 131 67.9
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 6.3e-45 184.5 131 67.2
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 8.3e-45 184.1 131 66.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.3e-45 184.1 128 71.9
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.1e-44 183.7 110 80.9
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.4e-44 183.3 124 75.0
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 4.1e-44 181.8 110 81.8
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 5.4e-44 181.4 110 79.1
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.2e-43 180.3 110 81.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.6e-43 179.9 110 76.4
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-43 179.9 110 80.0
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-43 179.5 110 79.1
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.7e-43 179.1 116 75.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 4.5e-43 178.3 110 79.1
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 4.5e-43 178.3 110 80.9
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 4.5e-43 178.3 110 78.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-42 176.8 133 63.2
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.3e-42 176.8 133 63.2
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.7e-42 176.4 110 80.0
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.9e-42 175.6 110 76.4
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.9e-42 175.6 110 78.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.8e-42 175.3 110 76.4
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 3.8e-42 175.3 110 77.3
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.0e-42 174.9 110 77.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 8.5e-42 174.1 110 73.6
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.1e-41 173.7 110 76.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.1e-41 173.7 110 77.3
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.9e-41 172.9 110 76.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.5e-41 172.6 133 61.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.2e-41 172.2 125 71.2
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 5.5e-41 171.4 110 75.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 7.2e-41 171.0 110 76.4
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.2e-40 170.2 112 75.9
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.1e-40 169.5 98 82.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.1e-40 169.5 112 75.0
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.6e-40 168.7 99 86.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 4.7e-40 168.3 110 75.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 8.0e-40 167.5 119 73.9
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 3.0e-39 165.6 106 76.4
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 6.8e-39 164.5 98 81.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 6.8e-39 164.5 98 83.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.5e-38 163.3 98 81.6
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 9.8e-38 160.6 110 72.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.3e-37 160.2 90 84.4
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.7e-37 159.8 123 61.0
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 8.3e-37 157.5 105 72.4
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 3.1e-36 155.6 119 65.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.2e-35 153.7 107 72.0
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 2.7e-35 152.5 98 74.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 2.7e-35 152.5 98 74.5
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 4.5e-35 151.8 127 62.2
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 7.7e-35 151.0 103 71.8
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 7.7e-35 151.0 110 70.0
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.9e-34 149.1 95 75.8
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-33 146.7 110 67.3
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 5.6e-33 144.8 121 62.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 9.5e-33 144.1 86 82.6
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.7e-32 141.7 148 52.7
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.8e-31 139.8 111 66.7
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.0e-30 136.3 111 63.1
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.4e-30 135.2 102 67.6
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 4.4e-30 135.2 115 58.3
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 9.8e-30 134.0 110 63.6
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 4.9e-29 131.7 110 60.9
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.8e-28 129.8 89 70.8
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 5.4e-28 128.3 100 64.0
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 9.2e-28 127.5 86 70.9
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 9.2e-28 127.5 105 58.1
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.0e-27 126.3 109 64.2
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.7e-26 123.2 88 67.0
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 5.0e-26 121.7 112 53.6
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-25 120.6 84 72.6
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.1e-25 120.6 70 80.0
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.1e-25 120.6 116 53.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 2.5e-25 119.4 110 51.8
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 4.3e-25 118.6 110 53.6
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 4.3e-25 118.6 107 58.9
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 7.3e-25 117.9 116 52.6
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 9.5e-25 117.5 110 56.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 4.7e-24 115.2 88 68.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.4e-23 113.6 81 64.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 3.1e-23 112.5 116 47.4
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.2e-23 111.7 93 58.1
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.9e-21 105.9 76 75.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.4e-21 104.8 109 49.5
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 8.3e-21 104.4 61 82.0
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.4e-20 103.6 126 47.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 6.0e-19 98.2 130 43.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 6.8e-15 84.7 64 62.5
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.5e-09 66.2 75 48.0
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.1e-08 63.2 56 51.8
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.0e-07 58.9 35 71.4


User provided reference genes

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