Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 3.0e-70 268.5 140 100.0
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.6e-52 209.5 140 77.1
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 6.4e-41 171.0 143 65.0
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 9.6e-37 157.1 140 58.6
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 3.1e-35 152.1 141 56.7
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 3.4e-34 148.7 132 56.8
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 8.4e-33 144.1 133 53.4
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 4.2e-32 141.7 140 49.3
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 6.0e-31 137.9 131 50.4
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 7.9e-31 137.5 132 53.8
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.3e-30 136.7 134 53.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-30 136.7 134 50.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 6.7e-30 134.4 140 48.6
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.1e-29 133.7 126 52.4
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.9e-29 132.9 134 51.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.3e-29 132.1 134 50.0
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.3e-29 132.1 135 48.9
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 3.3e-29 132.1 128 53.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 7.4e-29 131.0 134 49.3
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.6e-28 129.8 133 48.9
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.6e-28 129.8 137 51.1
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.1e-28 129.4 140 46.4
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 2.1e-28 129.4 128 50.8
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 4.8e-28 128.3 140 45.7
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.8e-28 128.3 140 45.7
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.8e-28 128.3 133 49.6
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 4.8e-28 128.3 114 60.5
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.1e-28 127.5 140 45.7
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.1e-27 127.1 135 51.9
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.8e-27 126.3 137 46.0
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.8e-27 126.3 124 53.2
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.1e-27 125.6 133 48.1
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.9e-27 124.4 145 46.2
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 6.9e-27 124.4 133 48.9
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 9.0e-27 124.0 135 48.1
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 9.0e-27 124.0 126 49.2
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-26 123.2 140 51.4
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.7e-25 119.8 132 47.7
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.7e-25 119.8 133 47.4
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.2e-25 119.4 135 46.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 3.8e-25 118.6 140 46.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 3.8e-25 118.6 123 48.0
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.4e-24 116.7 135 48.9
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.4e-24 116.7 134 48.5
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-24 115.2 131 45.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 7.1e-24 114.4 127 48.0
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.3e-24 114.0 136 46.3
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-23 113.6 134 48.5
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.2e-23 113.6 136 45.6
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.1e-23 112.8 127 43.3
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.7e-23 112.5 133 47.4
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 3.5e-23 112.1 145 44.1
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 6.0e-23 111.3 135 42.2
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.0e-23 111.3 135 44.4
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 6.0e-23 111.3 122 48.4
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 7.9e-23 110.9 139 41.7
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.8e-22 109.8 118 50.0
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.8e-22 109.8 130 44.6
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.8e-22 109.8 129 46.5
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.7e-22 107.5 132 46.2
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.5e-21 106.7 134 43.3
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.9e-21 106.3 145 45.5
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.3e-21 105.5 141 47.5
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 4.3e-21 105.1 123 44.7
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 4.3e-21 105.1 138 45.7
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.3e-20 103.6 144 42.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.3e-20 103.6 121 49.6
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.3e-20 103.6 145 43.4
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 2.8e-20 102.4 138 44.2
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.7e-20 102.1 125 44.8
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.7e-20 102.1 145 43.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.7e-20 102.1 124 46.0
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 6.2e-20 101.3 108 50.0
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 8.1e-20 100.9 133 41.4
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.1e-19 100.5 130 43.8
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-19 100.1 154 40.3
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.4e-19 99.4 104 51.0
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 9.0e-19 97.4 136 42.6
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.2e-18 97.1 120 43.3
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.4e-18 95.5 131 41.2
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.5e-18 95.1 135 42.2
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.2e-17 92.8 154 37.7
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.2e-17 92.8 124 43.5
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.2e-17 92.8 123 43.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 8.4e-17 90.9 138 37.0
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.5e-16 89.4 133 40.6
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 9.3e-16 87.4 135 43.7
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.1e-15 86.3 112 46.4
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.5e-15 85.5 106 47.2
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.5e-15 85.5 106 47.2
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.5e-15 85.5 120 45.8
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 7.9e-15 84.3 107 47.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.0e-14 84.0 108 49.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.3e-14 83.6 104 46.2
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.8e-14 83.2 108 49.1
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.8e-14 83.2 120 45.0
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.8e-14 83.2 122 37.7
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 3.0e-14 82.4 117 37.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 3.0e-14 82.4 117 37.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 5.1e-14 81.6 118 47.5
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 6.7e-14 81.3 106 46.2
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.9e-13 79.7 107 45.8
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 2.5e-13 79.3 107 45.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 2.5e-13 79.3 107 45.8
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.5e-13 79.3 130 34.6
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.3e-13 79.0 131 41.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.3e-13 79.0 109 47.7
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 3.3e-13 79.0 108 46.3
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 4.3e-13 78.6 113 44.2
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.3e-13 78.6 114 43.0
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.3e-13 78.6 134 37.3
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 5.7e-13 78.2 107 44.9
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 5.7e-13 78.2 107 44.9
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 9.6e-13 77.4 130 34.6
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.6e-12 76.6 143 36.4
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.8e-12 75.9 121 47.1
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.7e-12 75.5 133 42.9
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 4.8e-12 75.1 120 40.8
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.1e-11 73.9 130 38.5
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.8e-11 73.2 134 36.6
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.1e-11 72.4 142 36.6
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.2e-10 70.5 106 44.3
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 2.0e-10 69.7 136 38.2
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 2.0e-10 69.7 136 38.2
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 6.5e-09 64.7 116 38.8
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 1.4e-08 63.5 123 35.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 2.5e-08 62.8 122 36.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.5e-08 62.8 109 36.7
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 7.2e-08 61.2 85 35.3
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 7.2e-08 61.2 106 36.8
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 1.2e-07 60.5 134 31.3
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 4.6e-07 58.5 131 32.1
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.8e-06 56.6 130 34.6
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.8e-06 56.6 139 33.8
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 1.8e-06 56.6 143 32.2
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 3.0e-06 55.8 130 32.3
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 5.1e-06 55.1 130 31.5
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 5.1e-06 55.1 122 29.5
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 6.7e-06 54.7 130 30.8


User provided reference genes

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