Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 3.5e-39 164.5 82 100.0
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 5.8e-34 147.1 78 93.6
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 2.0e-26 122.1 86 74.4
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 8.4e-25 116.7 86 72.1
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 3.0e-22 108.2 84 66.7
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 3.0e-22 108.2 79 68.4
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 6.7e-22 107.1 84 64.3
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.9e-21 105.5 84 65.5
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 2.5e-21 105.1 85 65.9
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 7.4e-21 103.6 83 65.1
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 7.4e-21 103.6 83 62.7
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 9.6e-21 103.2 84 64.3
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 1.3e-20 102.8 82 63.4
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 1.3e-20 102.8 82 63.4
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.3e-20 102.8 80 65.0
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 1.6e-20 102.4 83 62.7
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 1.6e-20 102.4 80 65.0
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 1.6e-20 102.4 80 65.0
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 1.6e-20 102.4 82 63.4
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.1e-20 102.1 83 63.9
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 2.1e-20 102.1 84 63.1
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 2.8e-20 101.7 79 64.6
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 3.7e-20 101.3 80 65.0
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 4.8e-20 100.9 84 61.9
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 6.2e-20 100.5 82 65.9
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 8.1e-20 100.1 84 64.3
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 8.1e-20 100.1 83 61.4
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 8.1e-20 100.1 83 61.4
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 8.1e-20 100.1 83 61.4
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 8.1e-20 100.1 83 61.4
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 8.1e-20 100.1 83 61.4
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 8.1e-20 100.1 79 64.6
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 8.1e-20 100.1 79 63.3
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 1.4e-19 99.4 80 62.5
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 1.4e-19 99.4 83 63.9
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 1.4e-19 99.4 79 64.6
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 1.8e-19 99.0 79 62.0
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.4e-19 98.6 83 59.0
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.4e-19 98.6 80 63.8
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 2.4e-19 98.6 79 62.0
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 2.4e-19 98.6 85 61.2
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 3.1e-19 98.2 83 60.2
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 3.1e-19 98.2 79 63.3
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 3.1e-19 98.2 82 64.6
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 4.0e-19 97.8 83 59.0
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 5.3e-19 97.4 75 68.0
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 6.9e-19 97.1 79 62.0
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 6.9e-19 97.1 79 60.8
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 6.9e-19 97.1 77 63.6
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 9.0e-19 96.7 84 59.5
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 9.0e-19 96.7 84 56.0
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 9.0e-19 96.7 84 61.9
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 9.0e-19 96.7 83 63.9
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 1.2e-18 96.3 84 56.0
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 1.2e-18 96.3 80 62.5
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 1.2e-18 96.3 80 62.5
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 1.5e-18 95.9 79 59.5
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 2.0e-18 95.5 79 63.3
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 2.0e-18 95.5 83 62.7
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 3.4e-18 94.7 84 59.5
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 3.4e-18 94.7 84 60.7
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 4.5e-18 94.4 84 60.7
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 4.5e-18 94.4 84 60.7
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 5.8e-18 94.0 84 60.7
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 7.6e-18 93.6 82 57.3
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 1.3e-17 92.8 80 61.2
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 1.3e-17 92.8 83 57.8
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 1.3e-17 92.8 80 60.0
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 2.2e-17 92.0 85 56.5
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 3.8e-17 91.3 84 58.3
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 3.8e-17 91.3 85 57.6
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 3.8e-17 91.3 77 61.0
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 8.4e-17 90.1 84 57.1
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.4e-16 89.4 83 57.8
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 1.4e-16 89.4 88 55.7
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 1.4e-16 89.4 79 58.2
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 4.2e-16 87.8 81 58.0
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 5.5e-16 87.4 80 56.2
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 7.1e-16 87.0 82 54.9
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 1.2e-15 86.3 80 55.0
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 1.6e-15 85.9 81 55.6
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 3.5e-15 84.7 85 51.8
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 4.6e-15 84.3 82 53.7
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 4.6e-15 84.3 83 59.0
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 7.9e-15 83.6 82 53.7
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 7.9e-15 83.6 82 53.7
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 1.3e-14 82.8 80 53.8
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 2.3e-14 82.0 84 48.8
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 8.7e-14 80.1 83 54.2
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 8.7e-14 80.1 84 53.6
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.7e-14 80.1 81 49.4
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 1.1e-13 79.7 84 58.3
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 2.5e-13 78.6 84 57.1
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 9.6e-13 76.6 75 52.0
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 1.3e-12 76.3 84 52.4
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.4e-11 72.8 81 48.1
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 2.0e-10 68.9 81 49.4
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 4.5e-10 67.8 71 49.3
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 5.8e-10 67.4 79 44.3
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 7.6e-10 67.0 81 49.4
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 8.4e-09 63.5 172 30.2
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 1.1e-08 63.2 63 47.6
Mapoly0137s0028 Marchantia polymorpha HOM05D006634 ORTHO05D008282 1.9e-08 62.4 89 41.6
Lj1A192T37 Lonicera japonica HOM05D006634 ORTHO05D008282 3.2e-08 61.6 42 71.4
Potri.009G013701 Populus trichocarpa HOM05D006634 ORTHO05D008282 9.3e-08 60.1 41 75.6
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 2.1e-07 58.9 86 44.2
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 4.6e-07 57.8 48 58.3
Haze_23826 Corylus avellana HOM05D025838 ORTHO05D008282 1.8e-06 55.8 32 75.0
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 5.1e-06 54.3 48 54.2
A04p21560 Brassica napus HOM05D006634 ORTHO05D008282 8.7e-06 53.5 40 57.5


User provided reference genes

Program Settings