Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 6.6e-87 323.9 157 100.0
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.7e-71 270.8 158 88.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.0e-67 259.2 159 81.1
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 4.2e-65 251.5 157 80.3
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 9.7e-62 240.4 153 75.8
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.2e-61 237.3 153 73.2
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 8.2e-61 237.3 153 73.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 3.1e-60 235.3 156 71.2
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.1e-60 235.0 153 77.1
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.5e-59 233.0 153 74.5
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.0e-58 230.3 153 71.2
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.9e-57 226.1 159 69.2
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.2e-56 223.4 156 71.2
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.1e-56 222.6 161 70.2
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 2.7e-56 222.2 159 69.2
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 1.3e-55 219.9 158 71.5
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 7.4e-54 214.2 153 69.9
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.8e-53 212.2 154 70.1
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.8e-53 212.2 154 70.8
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 8.2e-53 210.7 159 66.0
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.1e-52 208.8 154 69.5
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.1e-52 208.4 157 62.4
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.0e-51 206.1 153 67.3
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.0e-50 203.8 156 67.9
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.7e-50 203.0 152 69.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 7.2e-49 197.6 156 66.7
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.1e-48 196.1 164 62.8
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.0e-47 193.7 138 69.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.4e-47 193.4 158 60.8
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.3e-47 192.6 147 60.5
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.3e-47 192.6 173 58.4
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 8.8e-47 190.7 138 65.9
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.1e-46 190.3 140 66.4
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 4.4e-46 188.3 154 64.9
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.7e-46 188.0 155 59.4
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.7e-46 188.0 155 59.4
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 9.7e-46 187.2 157 59.2
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-45 186.4 126 73.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.2e-45 186.0 159 60.4
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.8e-45 185.7 159 59.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 8.2e-45 184.1 144 60.4
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 8.2e-45 184.1 158 60.8
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.1e-44 183.7 155 63.9
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.1e-44 183.7 156 61.5
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.8e-44 183.0 159 59.7
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.2e-43 180.3 126 70.6
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.5e-43 179.9 154 58.4
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.5e-43 179.9 146 62.3
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.5e-43 179.9 137 68.6
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 2.6e-43 179.1 140 67.9
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.0e-42 177.2 157 61.1
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.2e-42 176.0 165 55.2
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 2.9e-42 175.6 169 55.0
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 3.8e-42 175.3 169 55.0
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 5.0e-42 174.9 148 56.1
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 1.1e-41 173.7 149 60.4
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 5.5e-41 171.4 144 60.4
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.2e-40 170.2 147 57.8
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.6e-40 169.9 148 58.1
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.1e-38 163.7 147 57.1
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.1e-38 163.7 119 65.5
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.5e-38 163.3 147 53.7
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 9.7e-38 160.6 159 47.8
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 9.7e-38 160.6 151 54.3
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 2.2e-37 159.5 153 53.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.8e-37 159.1 149 56.4
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 8.2e-37 157.5 129 58.1
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 9.1e-36 154.1 98 75.5
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 9.1e-36 154.1 147 57.1
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 4.5e-35 151.8 149 50.3
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 5.9e-35 151.4 159 48.4
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.7e-34 149.8 160 57.5
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.5e-33 146.7 139 60.4
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.5e-33 146.7 88 70.5
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 2.5e-33 146.0 147 51.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.6e-32 143.3 144 51.4
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 2.7e-32 142.5 155 47.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.7e-32 142.5 155 47.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.7e-32 142.5 145 52.4
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 2.7e-32 142.5 129 54.3
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 6.1e-32 141.4 128 57.8
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 6.1e-32 141.4 148 52.0
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.2e-30 137.1 130 54.6
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.5e-30 136.7 135 54.8
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.6e-30 136.0 154 44.8
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 7.5e-30 134.4 105 67.6
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.3e-29 133.7 142 52.8
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.7e-29 133.3 140 50.0
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.2e-29 132.9 146 48.6
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 2.2e-29 132.9 133 53.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.4e-28 130.2 147 46.9
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.8e-28 129.8 147 46.3
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 5.3e-28 128.3 130 52.3
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 5.3e-28 128.3 117 53.0
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.2e-27 127.1 151 47.0
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.2e-27 127.1 134 52.2
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.6e-27 126.7 160 45.0
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 4.5e-27 125.2 119 55.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 5.9e-27 124.8 151 45.0
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 5.9e-27 124.8 131 48.9
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.3e-26 123.6 163 42.3
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-26 123.6 151 46.4
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 2.2e-26 122.9 131 48.1
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.2e-26 122.9 82 67.1
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.9e-26 122.5 131 47.3
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 8.5e-26 120.9 134 48.5
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 8.5e-26 120.9 134 48.5
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 8.5e-26 120.9 144 53.5
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 8.5e-26 120.9 150 45.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.5e-25 120.2 131 50.4
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.2e-25 119.0 132 47.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 7.2e-25 117.9 84 61.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.2e-24 117.1 107 57.0
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.4e-23 113.6 142 45.1
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.6e-22 109.4 141 48.9
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.4e-22 109.0 136 41.9
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 7.5e-22 107.8 141 48.2
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 7.5e-22 107.8 141 48.2
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 7.5e-22 107.8 141 48.2
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.3e-21 107.1 139 46.0
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 2.2e-21 106.3 141 47.5
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.8e-21 105.1 155 40.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 6.3e-21 104.8 90 54.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.8e-20 103.2 145 43.4
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.6e-19 100.1 144 45.1
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.5e-19 99.0 126 44.4
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 5.9e-19 98.2 139 47.5
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.5e-18 94.7 162 36.4
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.5e-17 93.6 137 40.9
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 4.2e-17 92.0 137 40.9
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 9.5e-17 90.9 139 46.8
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 9.5e-17 90.9 138 40.6
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-16 90.5 66 65.2
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.8e-16 89.4 136 40.4
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.3e-15 86.3 142 35.9
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 3.0e-15 85.9 53 64.2
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 5.2e-15 85.1 166 33.7
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 6.8e-15 84.7 82 63.4
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.8e-12 76.6 138 41.3
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 1.0e-10 70.9 43 67.4
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 2.9e-10 69.3 53 62.3
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.1e-09 67.4 87 47.1
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.5e-09 66.2 79 39.2
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.3e-07 59.7 80 37.5
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 3.0e-07 59.3 81 38.3
C07p61110 Brassica napus HOM05D005114 ORTHO05D021810 6.8e-07 58.2 93 45.2
BcaNung02389 Brassica carinata HOM05D005114 ORTHO05D021810 2.0e-06 56.6 93 44.1


User provided reference genes

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