Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 8.0e-192 673.7 367 100.0
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.2e-185 651.7 367 96.5
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.4e-174 614.8 368 92.4
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.9e-161 572.8 368 85.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.4e-148 530.0 365 79.7
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.4e-148 530.0 375 77.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.6e-147 526.6 378 78.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 5.6e-145 518.1 380 76.1
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 9.6e-145 517.3 364 78.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 3.6e-144 515.4 370 77.6
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 6.2e-144 514.6 364 77.5
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 5.8e-142 508.1 373 76.4
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 8.4e-141 504.2 369 75.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.4e-140 503.4 358 78.5
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 4.2e-140 501.9 376 75.0
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 5.4e-140 501.5 372 74.2
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.6e-139 500.0 369 75.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.6e-139 500.0 373 74.5
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.7e-139 499.2 369 75.3
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 3.5e-139 498.8 328 82.9
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 4.6e-139 498.4 374 75.4
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 4.6e-139 498.4 382 73.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 4.6e-139 498.4 371 74.9
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 6.0e-139 498.0 371 75.5
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 7.8e-139 497.7 372 74.7
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.0e-138 497.3 373 74.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.0e-138 497.3 379 75.5
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.7e-138 496.5 372 73.7
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.7e-138 496.5 369 74.5
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.7e-138 496.5 375 75.7
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-138 496.1 374 75.1
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 5.1e-138 495.0 375 75.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 6.6e-138 494.6 373 73.7
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.5e-137 493.4 347 79.8
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 2.5e-137 492.7 374 75.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-137 492.3 369 74.5
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 3.3e-137 492.3 326 80.4
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-137 491.9 369 74.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 4.3e-137 491.9 361 75.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 5.6e-137 491.5 372 73.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.3e-137 491.1 369 74.5
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 7.3e-137 491.1 369 74.3
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.3e-137 491.1 369 74.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 7.3e-137 491.1 369 74.3
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 7.3e-137 491.1 356 77.0
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 9.6e-137 490.7 369 74.3
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.3e-136 490.3 369 74.3
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.6e-136 490.0 352 76.4
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-136 489.2 369 74.0
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.8e-136 489.2 327 81.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 6.2e-136 488.0 368 74.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.2e-136 488.0 367 75.2
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-136 487.6 369 74.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.1e-135 487.3 367 73.8
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.1e-135 487.3 325 80.6
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.4e-135 486.9 378 74.9
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.4e-135 486.9 370 73.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.8e-135 486.5 351 76.9
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.4e-135 486.1 370 73.0
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.4e-135 486.1 369 73.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 3.1e-135 485.7 369 73.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 3.1e-135 485.7 369 73.4
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 4.0e-135 485.3 372 72.0
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.3e-135 485.0 371 73.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 6.9e-135 484.6 369 73.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-134 483.4 370 72.7
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.6e-134 482.6 348 77.6
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.6e-134 482.6 371 74.4
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 3.4e-134 482.3 378 74.3
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-134 481.9 367 73.3
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 7.6e-134 481.1 367 73.3
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 9.9e-134 480.7 379 72.8
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 9.9e-134 480.7 378 73.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.2e-133 479.6 334 79.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.1e-132 477.2 340 77.6
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.1e-132 477.2 381 71.4
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.1e-132 477.2 368 71.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.4e-132 476.9 368 72.3
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 9.3e-132 474.2 366 71.9
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.2e-131 473.8 379 71.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.2e-131 473.8 338 77.5
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.6e-131 473.4 367 72.8
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.6e-131 473.4 377 72.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.1e-131 473.0 364 74.7
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.5e-131 472.2 338 75.7
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 7.9e-131 471.1 376 71.0
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.3e-130 469.5 372 69.4
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.0e-130 469.2 370 72.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.1e-130 468.4 368 72.8
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.5e-129 466.8 321 79.8
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.5e-129 466.8 364 66.5
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.9e-129 466.5 347 73.8
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 5.6e-129 464.9 328 78.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.3e-128 463.8 368 71.2
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 4.8e-128 461.8 376 68.9
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 8.1e-128 461.1 369 70.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 8.1e-128 461.1 369 70.2
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.4e-127 460.3 353 73.7
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 4.0e-127 458.8 367 70.6
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 4.0e-127 458.8 354 72.6
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 5.3e-127 458.4 331 77.3
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 5.3e-127 458.4 360 70.8
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 9.0e-127 457.6 369 69.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 9.0e-127 457.6 329 76.3
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-126 457.2 345 73.3
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.0e-126 456.4 360 70.6
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.4e-126 455.7 365 70.4
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 9.9e-126 454.1 369 69.6
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.2e-124 448.7 368 68.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.3e-122 443.7 324 73.1
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.3e-122 443.7 327 75.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.3e-122 443.7 363 69.7
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.0e-119 432.2 366 66.9
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.9e-117 426.0 379 62.5
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.5e-113 413.7 370 66.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.5e-113 413.7 366 67.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 7.4e-113 411.4 359 66.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 3.2e-108 396.0 317 72.6
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 9.3e-108 394.4 330 67.9
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 4.8e-104 382.1 294 73.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 2.7e-99 366.3 335 62.1
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 4.6e-99 365.5 326 63.8
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 6.1e-99 365.2 326 62.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 3.4e-94 349.4 247 78.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 3.4e-94 349.4 243 80.2
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.5e-94 349.0 290 70.3
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 3.8e-93 345.9 206 82.5
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.0e-90 337.8 327 60.2
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 3.9e-90 335.9 320 59.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.4e-87 327.4 344 56.1
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.0e-85 321.2 297 58.2
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.5e-85 318.2 362 55.2
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.5e-77 292.0 322 55.6
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.5e-76 290.8 328 56.7
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.7e-70 268.5 240 60.8
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-63 248.1 209 64.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.6e-51 207.6 208 56.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 4.0e-50 203.0 130 80.0
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 3.4e-49 199.9 142 72.5
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 5.6e-44 182.6 164 65.9
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.4e-41 173.3 165 55.8
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-33 148.3 90 77.8
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 7.6e-33 145.6 100 73.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 7.8e-30 135.6 95 72.6
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.3e-29 134.8 128 58.6
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.8e-26 124.4 94 68.1
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-25 121.7 78 79.5
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 6.4e-24 115.9 289 33.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.4e-23 114.8 126 54.0
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.7e-21 107.8 82 64.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.7e-21 107.8 124 52.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-19 101.7 116 50.0
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-19 100.5 65 75.4
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 9.0e-18 95.5 68 64.7
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 9.3e-15 85.5 303 32.3
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 8.7e-13 79.0 313 28.8
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 7.4e-12 75.9 163 38.0
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 9.6e-12 75.5 59 61.0
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.1e-11 72.4 52 67.3
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.1e-11 72.4 47 74.5
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-10 71.6 47 72.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 5.3e-10 69.7 63 57.1
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.3e-10 69.7 52 63.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 9.0e-10 68.9 62 58.1
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.4e-09 67.0 47 70.2
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.4e-09 67.0 52 63.5
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 6.4e-08 62.8 69 49.3
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-07 61.6 73 46.6
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-07 61.6 47 63.8
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 4.2e-07 60.1 67 76.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.2e-07 60.1 47 61.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.3e-07 58.9 73 49.3
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.3e-07 58.9 73 49.3
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-06 57.4 43 62.8


User provided reference genes

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