Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 8.4e-238 827.8 932 100.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 2.9e-182 643.3 873 96.6
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 6.7e-118 429.5 870 83.0
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 2.6e-114 417.5 877 82.8
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 3.8e-113 413.7 864 80.4
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 4.9e-113 413.3 872 81.2
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 7.9e-111 406.0 878 82.0
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.3e-110 405.2 875 76.0
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 4.8e-108 396.7 866 77.5
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 4.0e-107 393.7 868 74.9
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 9.0e-107 392.5 869 81.4
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.3e-105 388.7 870 78.5
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 2.9e-105 387.5 866 73.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.1e-103 381.3 868 77.9
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.3e-102 378.6 867 80.3
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 4.3e-101 373.6 871 80.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 7.4e-101 372.9 872 74.8
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 6.3e-100 369.8 871 79.8
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 8.5e-97 359.4 877 74.7
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 4.2e-96 357.1 877 68.6
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 2.1e-95 354.8 879 75.7
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.1e-93 349.0 877 76.6
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 3.4e-90 337.4 869 74.6
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.5e-88 331.3 870 76.9
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 2.7e-87 327.8 874 76.8
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 6.1e-87 326.6 879 70.3
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 6.1e-87 326.6 874 76.5
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.6e-85 321.2 867 76.2
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 3.3e-85 320.9 870 74.4
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.4e-83 315.5 875 72.5
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.8e-83 315.1 878 73.5
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.1e-83 314.3 870 75.9
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.0e-82 311.6 877 75.6
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.5e-82 310.5 866 74.5
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.9e-81 307.8 880 66.7
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 5.0e-81 307.0 866 74.4
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.5e-80 304.7 866 74.4
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 3.2e-80 304.3 879 69.2
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 4.2e-80 303.9 870 74.5
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 6.1e-79 300.1 867 75.3
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.4e-78 298.9 870 75.7
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.8e-78 298.5 867 75.3
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.8e-78 298.5 869 73.1
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 3.0e-78 297.7 867 75.5
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 5.3e-75 287.0 862 75.5
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 9.1e-75 286.2 877 66.4
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.6e-74 285.4 882 65.2
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 4.5e-74 283.9 876 75.1
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 7.7e-74 283.1 867 70.8
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.1e-72 279.3 878 69.9
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.5e-72 278.9 875 66.6
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 9.4e-72 276.2 874 69.9
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.6e-71 274.2 874 66.0
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 3.0e-70 271.2 377 72.7
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 4.0e-70 270.8 778 81.2
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 4.0e-70 270.8 893 69.4
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.5e-69 268.9 870 72.1
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 2.6e-69 268.1 880 61.0
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 5.7e-69 266.9 871 64.1
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 5.7e-69 266.9 383 71.3
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.8e-68 264.6 202 66.3
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 3.7e-68 264.2 855 69.1
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.8e-68 263.8 870 66.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.8e-68 263.8 870 66.8
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 3.1e-67 261.2 379 71.2
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 2.7e-66 258.1 444 59.2
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 3.5e-66 257.7 874 74.3
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 8.5e-65 253.1 867 74.9
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.5e-64 252.3 377 70.6
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 2.5e-64 251.5 870 73.0
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.2e-63 249.2 868 66.2
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 4.7e-63 247.3 365 71.2
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 8.8e-62 243.0 365 71.5
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.0e-61 241.9 367 71.1
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.4e-61 241.1 383 68.9
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 4.8e-60 237.3 377 67.6
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.2e-58 232.6 359 70.2
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 7.7e-58 229.9 368 70.1
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.3e-57 228.4 196 56.6
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.5e-56 224.9 866 73.8
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 4.2e-56 224.2 344 72.4
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 9.5e-56 223.0 871 67.6
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.1e-55 221.9 344 72.1
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 4.7e-55 220.7 829 69.7
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 1.7e-52 212.2 377 64.2
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.4e-51 209.1 871 69.0
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.0e-49 203.0 412 51.7
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 1.9e-43 182.2 380 62.9
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 5.4e-43 180.6 180 50.0
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.5e-40 171.8 382 58.4
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 2.5e-40 171.8 388 59.8
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 4.3e-40 171.0 889 54.2
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.1e-38 166.4 173 48.6
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.4e-38 166.0 387 60.2
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.4e-35 155.2 736 78.8
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.2e-34 152.9 375 60.3
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.3e-30 138.7 196 42.3
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 4.4e-29 134.4 184 39.1
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 9.9e-29 133.3 321 65.4
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.0e-25 123.2 396 55.3
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 6.6e-25 120.6 145 49.0
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.6e-23 115.9 140 42.9
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.6e-23 114.8 143 44.1
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 2.9e-20 105.1 102 52.9
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 5.4e-19 100.9 93 52.7
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 9.6e-16 90.1 120 48.3
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 3.9e-09 68.2 64 53.1
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 9.0e-06 57.0 70 38.6


User provided reference genes

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