Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 2.4e-63 245.4 126 100.0
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.7e-48 194.9 126 84.9
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 4.7e-35 151.4 126 69.0
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.4e-33 145.2 126 63.5
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 3.4e-33 145.2 125 68.0
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.7e-32 141.7 126 68.3
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.7e-32 141.7 125 66.4
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 6.4e-32 141.0 125 65.6
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.4e-32 141.0 125 65.6
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 6.4e-32 141.0 125 64.8
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 1.4e-31 139.8 125 64.8
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 1.9e-31 139.4 125 64.0
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 3.2e-31 138.7 125 64.8
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 9.2e-31 137.1 125 62.4
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.1e-30 136.0 125 64.8
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.1e-30 136.0 125 61.6
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 4.6e-30 134.8 125 63.2
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 7.8e-30 134.0 126 61.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 2.3e-29 132.5 125 62.4
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.9e-29 131.7 126 61.1
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 5.1e-29 131.3 125 62.4
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 6.6e-29 131.0 125 61.6
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 8.6e-29 130.6 125 62.4
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 8.6e-29 130.6 126 61.1
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 8.6e-29 130.6 125 62.4
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.2e-27 126.7 125 58.4
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.2e-27 126.7 125 58.4
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.2e-27 126.7 125 59.2
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 1.6e-27 126.3 126 57.9
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 1.6e-27 126.3 126 57.9
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.8e-27 125.6 125 56.8
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.7e-27 124.8 125 62.4
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 4.7e-27 124.8 125 57.6
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.0e-26 121.7 125 56.8
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 5.2e-26 121.3 125 57.6
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 6.8e-26 120.9 125 58.4
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 6.8e-26 120.9 125 58.4
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 6.8e-26 120.9 126 54.0
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.9e-26 120.6 125 61.6
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.2e-25 120.2 126 56.3
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.2e-25 120.2 126 54.8
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-25 119.4 125 56.8
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.6e-25 119.0 125 57.6
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 2.6e-25 119.0 125 54.4
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.4e-25 118.6 125 57.6
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 3.4e-25 118.6 126 56.3
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 4.4e-25 118.2 126 57.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 9.9e-25 117.1 125 52.8
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.7e-24 116.3 126 54.8
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-24 116.3 126 54.8
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-24 116.3 126 54.8
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.7e-24 116.3 126 54.0
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.7e-24 116.3 126 54.8
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 2.2e-24 115.9 125 53.6
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 2.2e-24 115.9 126 53.2
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 2.9e-24 115.5 125 57.6
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.4e-23 113.2 125 56.8
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 1.4e-23 113.2 105 63.8
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.9e-23 112.8 117 54.7
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.2e-23 112.1 126 52.4
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 3.2e-23 112.1 121 54.5
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.4e-23 111.3 126 54.0
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 7.1e-23 110.9 126 53.2
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 7.1e-23 110.9 126 52.4
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.3e-23 110.5 125 56.8
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 1.2e-22 110.2 123 51.2
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-22 110.2 56 100.0
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 1.6e-22 109.8 124 54.0
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 1.6e-22 109.8 125 51.2
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.7e-22 109.0 126 52.4
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 4.6e-22 108.2 126 52.4
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.6e-22 108.2 126 50.8
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 6.0e-22 107.8 124 55.6
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 6.0e-22 107.8 127 52.8
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 6.0e-22 107.8 126 50.8
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 6.0e-22 107.8 127 52.8
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 6.0e-22 107.8 126 52.4
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 7.8e-22 107.5 124 54.8
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 7.8e-22 107.5 126 50.8
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 7.8e-22 107.5 127 52.8
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 7.8e-22 107.5 127 52.8
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 7.8e-22 107.5 126 55.6
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 7.8e-22 107.5 125 52.8
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 7.8e-22 107.5 108 57.4
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 1.0e-21 107.1 126 50.0
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-21 106.7 123 52.0
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.3e-21 106.7 125 51.2
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.7e-21 106.3 126 50.0
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.3e-21 105.9 126 50.0
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.3e-21 105.9 125 48.0
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.0e-21 105.5 125 51.2
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 3.9e-21 105.1 106 55.7
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.9e-21 105.1 125 50.4
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 3.9e-21 105.1 125 48.8
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 5.1e-21 104.8 106 55.7
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 5.1e-21 104.8 126 54.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 5.1e-21 104.8 125 50.4
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 5.1e-21 104.8 125 51.2
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 6.6e-21 104.4 127 52.0
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 8.7e-21 104.0 125 52.8
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.5e-20 103.2 125 53.6
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 2.5e-20 102.4 124 52.4
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 3.3e-20 102.1 125 46.4
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.3e-20 102.1 125 46.4
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.3e-20 102.1 125 46.4
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-20 101.7 127 49.6
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 4.3e-20 101.7 125 46.4
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 4.3e-20 101.7 125 51.2
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 5.6e-20 101.3 118 51.7
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 7.3e-20 100.9 125 48.8
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 7.3e-20 100.9 125 48.8
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-19 100.1 126 49.2
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-19 99.8 114 50.9
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 1.6e-19 99.8 125 48.8
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-19 99.4 124 50.0
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 1.1e-18 97.1 125 44.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 1.4e-18 96.7 100 58.0
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.4e-18 96.7 128 45.3
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 3.1e-18 95.5 107 52.3
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 3.1e-18 95.5 105 56.2
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 4.0e-18 95.1 131 46.6
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 4.0e-18 95.1 131 46.6
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 4.0e-18 95.1 123 48.0
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.9e-18 94.4 125 44.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.9e-18 94.4 125 44.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.9e-18 94.4 125 44.0
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 6.9e-18 94.4 132 46.2
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 6.9e-18 94.4 123 47.2
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-17 93.6 107 52.3
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.6e-17 92.4 91 58.2
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 9.9e-17 90.5 132 43.2
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 9.9e-17 90.5 124 44.4
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 9.9e-17 90.5 126 45.2
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.7e-16 89.7 116 48.3
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 3.8e-16 88.6 124 45.2
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 8.4e-16 87.4 125 42.4
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.1e-15 87.0 125 42.4
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.4e-15 86.7 124 44.4
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.9e-15 86.3 107 50.5
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.9e-15 86.3 125 44.0
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.9e-15 86.3 125 46.4
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 2.4e-15 85.9 107 48.6
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.4e-15 85.9 123 40.7
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.4e-15 84.7 107 49.5
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 7.1e-15 84.3 126 41.3
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 9.3e-15 84.0 107 49.5
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-14 83.2 105 47.6
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.1e-14 82.8 107 48.6
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 3.5e-14 82.0 135 35.6
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 4.6e-14 81.6 92 55.4
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 7.9e-14 80.9 125 40.0
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.9e-14 80.9 115 43.5
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.9e-13 78.6 126 42.1
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 6.6e-13 77.8 55 70.9
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 8.7e-13 77.4 109 45.0
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 8.7e-13 77.4 96 50.0
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.1e-12 77.0 96 46.9
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.9e-12 76.3 126 40.5
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 2.5e-12 75.9 84 57.1
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.6e-11 73.2 97 47.4
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.6e-11 73.2 126 38.1
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 2.8e-11 72.4 86 50.0
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 3.6e-11 72.0 125 37.6
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 4.8e-11 71.6 55 69.1
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 8.1e-11 70.9 53 67.9
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.4e-10 70.1 119 36.1
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 1.4e-10 70.1 125 39.2
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 4.0e-10 68.6 48 72.9
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 1.2e-09 67.0 108 37.0
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.2e-09 67.0 121 35.5
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 3.4e-09 65.5 120 36.7
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 5.8e-09 64.7 54 59.3
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 7.6e-09 64.3 126 35.7
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 9.9e-09 63.9 118 34.7
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 1.3e-08 63.5 125 37.6
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 1.3e-08 63.5 87 46.0
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 1.7e-08 63.2 56 58.9
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 2.2e-08 62.8 125 36.8
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 3.8e-08 62.0 124 36.3
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 8.4e-08 60.8 126 35.7
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 2.4e-07 59.3 96 42.7
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.5e-07 58.2 106 41.5
CARHR191280 Cardamine hirsuta HOM05D003660 ORTHO05D003415 7.1e-07 57.8 60 55.0
vmacro07457 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 9.3e-07 57.4 54 57.4
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 2.1e-06 56.2 121 31.4
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 7.9e-06 54.3 103 33.0


User provided reference genes

Program Settings