Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 6.2e-118 427.6 229 100.0
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.8e-112 409.5 229 93.0
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 6.4e-107 391.0 231 87.9
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 4.6e-105 384.8 229 85.2
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 6.0e-105 384.4 226 85.0
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 226 85.4
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.1e-103 380.2 229 84.7
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.5e-103 379.8 230 84.8
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.9e-103 379.4 229 84.3
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 2.5e-103 379.0 229 84.7
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.3e-103 378.6 229 85.2
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.3e-103 378.6 229 85.2
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 4.3e-103 378.3 229 85.6
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 5.6e-103 377.9 227 86.8
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 5.6e-103 377.9 226 86.3
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 5.6e-103 377.9 229 85.2
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 9.6e-103 377.1 234 83.8
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 229 85.2
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.1e-102 375.9 227 84.1
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 3.7e-102 375.2 229 81.7
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 4.8e-102 374.8 229 84.3
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 8.2e-102 374.0 229 84.3
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.4e-101 373.2 229 83.8
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 1.8e-101 372.9 229 83.0
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 2.4e-101 372.5 232 82.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 3.1e-101 372.1 226 84.5
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 4.0e-101 371.7 231 82.7
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 4.0e-101 371.7 230 84.3
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 6.9e-101 370.9 230 84.8
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 6.9e-101 370.9 234 83.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 9.0e-101 370.5 231 82.3
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 9.0e-101 370.5 235 81.7
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.5e-100 369.8 233 82.0
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.5e-100 369.8 227 85.5
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.0e-100 369.4 229 83.8
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.6e-100 369.0 229 83.4
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.6e-100 369.0 229 83.0
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 3.4e-100 368.6 227 84.6
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.4e-100 368.6 229 82.5
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 4.5e-100 368.2 223 86.1
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 4.5e-100 368.2 229 83.8
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 4.5e-100 368.2 229 83.4
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 4.5e-100 368.2 230 84.3
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.5e-100 368.2 230 84.3
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 5.8e-100 367.9 231 83.5
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 5.8e-100 367.9 229 82.1
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 5.8e-100 367.9 229 83.0
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 7.6e-100 367.5 227 85.0
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 7.6e-100 367.5 229 83.0
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.0e-99 367.1 231 83.1
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.0e-99 367.1 229 83.4
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.0e-99 367.1 229 83.0
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.0e-99 367.1 256 75.8
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 1.0e-99 367.1 229 83.0
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.3e-99 366.7 231 83.1
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.3e-99 366.7 229 82.5
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.3e-99 366.7 225 83.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.3e-99 366.7 232 82.3
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 82.1
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 82.5
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 82.5
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 82.5
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 83.0
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 81.7
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.7e-99 366.3 229 81.2
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.2e-99 365.9 229 83.0
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.9e-99 365.5 229 83.0
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.9e-99 365.5 229 82.5
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 2.9e-99 365.5 231 83.5
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.9e-99 365.5 229 81.2
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 3.8e-99 365.2 231 82.3
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 3.8e-99 365.2 229 82.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.8e-99 365.2 229 82.5
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 4.9e-99 364.8 230 83.5
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 8.4e-99 364.0 222 84.7
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 8.4e-99 364.0 227 82.8
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.1e-98 363.6 231 81.8
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.1e-98 363.6 229 82.1
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.1e-98 363.6 230 84.3
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.9e-98 362.8 229 82.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.5e-98 362.5 229 82.1
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.5e-98 362.5 231 81.8
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.5e-98 362.5 225 83.6
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.2e-98 362.1 229 81.7
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.2e-98 362.1 229 81.7
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.2e-98 362.1 227 82.4
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.2e-98 362.1 230 83.5
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 3.2e-98 362.1 229 81.2
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 5.5e-98 361.3 227 83.3
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 7.1e-98 360.9 227 84.6
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 7.1e-98 360.9 229 80.8
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 9.3e-98 360.5 232 81.5
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.2e-97 360.1 232 80.6
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.6e-97 359.8 209 87.6
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.6e-97 359.8 231 81.0
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.6e-97 359.8 225 84.0
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 2.1e-97 359.4 229 79.9
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 2.7e-97 359.0 235 80.0
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 2.7e-97 359.0 232 81.0
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.5e-97 358.6 226 84.5
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 6.0e-97 357.8 227 78.9
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 7.9e-97 357.5 222 84.7
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.0e-96 357.1 231 80.1
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 3.0e-96 355.5 212 88.2
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 6.7e-96 354.4 229 79.9
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 3.7e-94 348.6 226 79.2
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 4.8e-94 348.2 221 80.1
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 2.4e-93 345.9 203 86.2
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 4.1e-93 345.1 226 77.4
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 6.9e-93 344.4 300 64.7
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.8e-91 338.6 229 77.3
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 2.7e-89 332.4 223 75.3
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 3.6e-89 332.0 233 77.3
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 6.3e-86 321.2 192 86.5
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 8.5e-83 310.8 207 77.8
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-82 310.5 218 71.1
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 4.2e-82 308.5 221 72.9
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 7.0e-77 291.2 212 72.6
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.9e-75 285.8 179 82.7
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.1e-74 283.9 192 79.2
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.1e-71 273.9 194 76.3
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.7e-71 270.8 161 87.6
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.1e-69 267.3 158 88.0
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 7.0e-69 264.6 158 86.1
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 9.1e-69 264.2 158 86.1
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.2e-68 263.8 192 74.0
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.2e-68 263.8 178 77.5
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 4.5e-68 261.9 157 87.3
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.5e-67 257.7 186 73.1
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.9e-66 256.5 161 82.0
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 2.1e-65 253.1 181 72.4
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 9.4e-58 227.6 160 73.1
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 2.3e-51 206.5 161 69.6
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.5e-50 203.0 124 83.1
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.2e-39 167.5 110 80.9
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.2e-38 163.3 95 89.5
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.6e-36 157.1 96 83.3
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 8.9e-32 141.4 158 51.9
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 6.4e-30 135.2 79 84.8
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.2e-29 132.9 88 79.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 8.1e-25 118.2 206 37.4
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.5e-23 114.0 81 76.5
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.6e-23 113.2 57 98.2
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 7.1e-21 105.1 63 77.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-17 92.4 66 74.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 5.1e-11 72.4 50 74.0


User provided reference genes

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