Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0120100 Salix brachista HOM05D008303 ORTHO05D010386 2.2e-67 258.8 130 100.0
Potri.004G178500 Populus trichocarpa HOM05D008303 ORTHO05D010386 2.6e-60 235.3 130 92.3
Potri.009G138700 Populus trichocarpa HOM05D008303 ORTHO05D010386 1.0e-45 186.8 131 78.6
Sabra09G0107400 Salix brachista HOM05D008303 ORTHO05D010386 9.2e-34 147.1 129 65.9
Manes.04G070500 Manihot esculenta HOM05D008303 ORTHO05D010386 2.5e-31 139.0 127 64.6
Manes.04G070400 Manihot esculenta HOM05D008303 ORTHO05D010386 3.6e-30 135.2 128 64.1
Thecc.02G054500 Theobroma cacao HOM05D008303 ORTHO05D010386 9.9e-28 127.1 121 60.3
Ciclev10030089m.g Citrus clementina HOM05D008303 ORTHO05D010386 5.1e-24 114.8 136 50.0
COL.COLO4_36725 Corchorus olitorius HOM05D008303 ORTHO05D010386 1.5e-23 113.2 122 55.7
COL.COLO4_36726 Corchorus olitorius HOM05D008303 ORTHO05D010386 1.5e-23 113.2 122 55.7
Aqoxy5G01096 Aquilegia oxysepala HOM05D008303 ORTHO05D010386 1.9e-23 112.8 132 49.2
Rhsim11G0193900 Rhododendron simsii HOM05D008303 ORTHO05D010386 2.8e-22 109.0 130 50.0
QL11p052465 Quercus lobata HOM05D008303 ORTHO05D010386 8.1e-22 107.5 119 50.4
Dinv14130 Davidia involucrata HOM05D001535 ORTHO05D003710 4.0e-21 105.1 89 61.8
Oeu015521.1 Olea europaea HOM05D008303 ORTHO05D010386 1.2e-20 103.6 125 46.4
Gohir.D01G161900 Gossypium hirsutum HOM05D008303 ORTHO05D010386 1.5e-20 103.2 126 50.0
Gorai.002G200800 Gossypium raimondii HOM05D008303 ORTHO05D010386 7.6e-20 100.9 126 50.0
Gorai.005G255400 Gossypium raimondii HOM05D008303 ORTHO05D010386 2.9e-19 99.0 131 48.1
Nn6g31905 Nelumbo nucifera HOM05D008303 ORTHO05D010386 2.9e-19 99.0 137 43.1
Gohir.A01G170900 Gossypium hirsutum HOM05D008303 ORTHO05D010386 3.8e-19 98.6 127 48.8
Gohir.A03G206100 Gossypium hirsutum HOM05D008303 ORTHO05D010386 8.4e-19 97.4 131 47.3
Gohir.D02G227500 Gossypium hirsutum HOM05D008303 ORTHO05D010386 1.4e-18 96.7 130 47.7
QL11p052446 Quercus lobata HOM05D008303 ORTHO05D010386 4.2e-18 95.1 105 49.5
Haze_02095 Corylus avellana HOM05D008303 ORTHO05D010386 2.1e-17 92.8 121 50.4
Migut.B00055 Erythranthe guttata HOM05D008303 ORTHO05D010386 2.1e-17 92.8 123 48.0
Cfa005292 Carpinus fangiana HOM05D008303 ORTHO05D010386 1.1e-15 87.0 122 47.5
CiPaw.06G120000 Carya illinoinensis HOM05D008303 ORTHO05D010386 3.6e-14 82.0 144 43.1
Prupe.8G169600 Prunus persica HOM05D008303 ORTHO05D010386 8.1e-14 80.9 81 58.0
CsaV3_7G001230 Cucumis sativus L. HOM05D008303 ORTHO05D010386 1.4e-13 80.1 126 45.2
MELO3C013332.2 Cucumis melo HOM05D008303 ORTHO05D010386 2.4e-13 79.3 126 43.7
MSTRG.5463 Avicennia marina HOM05D008303 ORTHO05D010386 4.0e-13 78.6 127 40.9
Ciclev10030098m.g Citrus clementina HOM05D008303 ORTHO05D010386 6.9e-13 77.8 84 53.6
Glyma.10G283700 Glycine max HOM05D008303 ORTHO05D010386 3.4e-12 75.5 132 47.0
Atru.chr5.3448 Acer truncatum HOM05D008303 ORTHO05D010386 4.4e-12 75.1 146 39.7
Ah.01g023280 Amaranthus hybridus HOM05D008303 ORTHO05D010386 4.4e-12 75.1 126 39.7
Sc18g0006250 Simmondsia chinensis HOM05D008303 ORTHO05D010386 4.4e-12 75.1 129 42.6
ClCG02G003900 Citrullus lanatus HOM05D008303 ORTHO05D010386 9.9e-12 73.9 120 43.3
Sed0009685 Sechium edule HOM05D008303 ORTHO05D010386 1.7e-11 73.2 121 43.8
Glyma.20G106100 Glycine max HOM05D008303 ORTHO05D010386 3.8e-11 72.0 126 45.2
Migut.N01334 Erythranthe guttata HOM05D008303 ORTHO05D010386 6.4e-11 71.2 124 37.9
EL10Ac9g21335 Beta vulgaris HOM05D008303 ORTHO05D010386 8.4e-11 70.9 129 38.0
Cpa.g.sc20.118 Carica papaya HOM05D008303 ORTHO05D010386 1.9e-10 69.7 152 38.2
FvH4_2g15720 Fragaria vesca HOM05D014143 ORTHO05D016307 1.2e-09 67.0 135 37.0
Sopen01g053870 Solanum pennellii HOM05D008303 ORTHO05D010386 2.7e-09 65.9 126 38.9
arahy.Tifrunner.gnm1.ann1.DC2STY Arachis hypogaea HOM05D008303 ORTHO05D010386 3.5e-09 65.5 123 40.7
Nitab4.5_0004867g0100 Nicotiana tabacum HOM05D008303 ORTHO05D010386 3.5e-09 65.5 78 50.0
FAN24G2158 Fragaria x ananassa HOM05D014143 ORTHO05D016307 4.6e-09 65.1 135 38.5
Phvul.007G017600 Phaseolus vulgaris HOM05D008303 ORTHO05D010386 1.0e-08 63.9 89 50.6
Lalb_Chr02g0143531 Lupinus albus HOM05D008303 ORTHO05D010386 1.7e-08 63.2 88 42.0
Ah.01g008130 Amaranthus hybridus HOM05D008303 ORTHO05D010386 5.1e-08 61.6 128 39.1
Lsat_1_v5_gn_4_72380 Lactuca sativa HOM05D019391 ORTHO05D022529 6.6e-08 61.2 100 37.0
AUR62010007 Chenopodium quinoa HOM05D008303 ORTHO05D010386 1.1e-07 60.5 100 39.0
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 1.1e-07 60.5 126 37.3
AUR62012998 Chenopodium quinoa HOM05D008303 ORTHO05D010386 1.1e-07 60.5 119 34.5
PGSC0003DMG400018640 Solanum tuberosum HOM05D008303 ORTHO05D010386 1.5e-07 60.1 73 47.9
SGA_v2.0_scaffold58G20342 Striga asiatica HOM05D008303 ORTHO05D010386 3.3e-07 58.9 124 34.7
arahy.Tifrunner.gnm1.ann1.5P9XPP Arachis hypogaea HOM05D008303 ORTHO05D010386 1.3e-06 57.0 85 44.7
VMungo0720G2805 Vigna mungo HOM05D008303 ORTHO05D010386 1.6e-06 56.6 110 37.3
Lsat_1_v5_gn_4_72220 Lactuca sativa HOM05D019391 ORTHO05D022529 2.8e-06 55.8 96 36.5
Lsat_1_v5_gn_7_46500 Lactuca sativa HOM05D019391 ORTHO05D022529 3.6e-06 55.5 98 34.7


User provided reference genes

Program Settings