Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0106300 Salix brachista HOM05D006897 ORTHO05D008825 8.5e-37 156.4 73 100.0
Sabra06G0096400 Salix brachista HOM05D006897 ORTHO05D008825 8.6e-13 76.6 39 92.3
Manes.08G012300 Manihot esculenta HOM05D006897 ORTHO05D008825 1.2e-11 72.8 39 82.1
Potri.006G122200 Populus trichocarpa HOM05D006897 ORTHO05D008825 1.2e-11 72.8 39 84.6
GSVIVG01033669001 Vitis vinifera HOM05D006897 ORTHO05D008825 2.8e-11 71.6 39 79.5
Aqoxy1G01120 Aquilegia oxysepala HOM05D006897 ORTHO05D008825 1.0e-10 69.7 39 79.5
CSS0029455 Camellia sinensis var. sinensis HOM05D006897 ORTHO05D008825 1.0e-10 69.7 39 76.9
Lj3A989T53 Lonicera japonica HOM05D006897 ORTHO05D008825 1.0e-10 69.7 43 69.8
Thecc.05G070500 Theobroma cacao HOM05D006897 ORTHO05D008825 1.4e-10 69.3 42 69.0
Gohir.A11G323600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 1.8e-10 68.9 39 74.4
Gohir.D11G342700 Gossypium hirsutum HOM05D006897 ORTHO05D008825 1.8e-10 68.9 39 74.4
Gorai.007G372800 Gossypium raimondii HOM05D006897 ORTHO05D008825 1.8e-10 68.9 39 74.4
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.8e-10 68.9 37 86.5
RcHm_v2.0_Chr3g0470611 Rosa chinensis HOM05D006897 ORTHO05D008825 2.3e-10 68.6 39 71.8
Prupe.7G126900 Prunus persica HOM05D006897 ORTHO05D008825 4.0e-10 67.8 39 71.8
FvH4_6g16650 Fragaria vesca HOM05D006897 ORTHO05D008825 5.2e-10 67.4 39 71.8
FAN05G2962 Fragaria x ananassa HOM05D006897 ORTHO05D008825 5.2e-10 67.4 39 71.8
FAN05G5588 Fragaria x ananassa HOM05D006897 ORTHO05D008825 5.2e-10 67.4 39 71.8
FAN14G2109 Fragaria x ananassa HOM05D006897 ORTHO05D008825 5.2e-10 67.4 39 71.8
Lsat_1_v5_gn_6_28260 Lactuca sativa HOM05D006897 ORTHO05D008825 5.2e-10 67.4 39 76.9
TWI74G0074 Tripterygium wilfordii HOM05D006897 ORTHO05D008825 5.2e-10 67.4 39 74.4
FAN09G4221 Fragaria x ananassa HOM05D006897 ORTHO05D008825 6.8e-10 67.0 39 71.8
MD12G1108500 Malus domestica HOM05D006897 ORTHO05D008825 6.8e-10 67.0 39 69.2
HPP92_010165 Vanilla planifolia HOM05D006897 ORTHO05D008825 6.8e-10 67.0 40 65.0
CiPaw.09G169900 Carya illinoinensis HOM05D006897 ORTHO05D008825 1.2e-09 66.2 39 71.8
Haze_20509 Corylus avellana HOM05D006897 ORTHO05D008825 1.2e-09 66.2 39 74.4
MD04G1090000 Malus domestica HOM05D006897 ORTHO05D008825 1.2e-09 66.2 39 69.2
PSO063G5108 Papaver somniferum HOM05D006897 ORTHO05D008825 2.0e-09 65.5 39 74.4
PSO339G3187 Papaver somniferum HOM05D006897 ORTHO05D008825 2.0e-09 65.5 39 74.4
Atru.chr8.1762 Acer truncatum HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 74.4
Cfa017644 Carpinus fangiana HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 71.8
COL.COLO4_26923 Corchorus olitorius HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 69.2
HanXRQChr13g0400941 Helianthus annuus HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 69.2
Nitab4.5_0000527g0030 Nicotiana tabacum HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 74.4
Nitab4.5_0009369g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 74.4
Solyc10g083910.3 Solanum lycopersicum HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 74.4
Sopen10g033350 Solanum pennellii HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 74.4
PGSC0003DMG400028283 Solanum tuberosum HOM05D006897 ORTHO05D008825 2.6e-09 65.1 39 74.4
Gohir.D04G109600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 3.4e-09 64.7 39 71.8
Nitab4.5_0002626g0030 Nicotiana tabacum HOM05D000468 ORTHO05D000548 3.4e-09 64.7 73 45.2
Cpa.g.sc92.100 Carica papaya HOM05D006897 ORTHO05D008825 4.4e-09 64.3 39 71.8
CDE02G4617 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 4.4e-09 64.3 39 71.8
Ca_08918_v3 Cicer arietinum L. HOM05D006897 ORTHO05D008825 4.4e-09 64.3 39 69.2
Oeu041483.1 Olea europaea HOM05D006897 ORTHO05D008825 4.4e-09 64.3 39 69.2
Psat3g039920 Pisum sativum HOM05D006897 ORTHO05D008825 4.4e-09 64.3 39 69.2
Nn2g13847 Nelumbo nucifera HOM05D006897 ORTHO05D008825 5.8e-09 63.9 39 71.8
Ciclev10013772m.g Citrus clementina HOM05D006897 ORTHO05D008825 7.5e-09 63.5 38 68.4
Nitab4.5_0000063g0200 Nicotiana tabacum HOM05D006897 ORTHO05D008825 7.5e-09 63.5 39 71.8
CDE05G1066 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 9.8e-09 63.2 39 69.2
Peaxi162Scf00311g01426 Petunia axillaris HOM05D006897 ORTHO05D008825 9.8e-09 63.2 39 69.2
TPR.G32809 Trifolium pratense HOM05D006897 ORTHO05D008825 9.8e-09 63.2 39 66.7
TAR623G0762 Trochodendron aralioides HOM05D000468 ORTHO05D000548 9.8e-09 63.2 39 69.2
Thhalv10017426m.g Eutrema salsugineum HOM05D006897 ORTHO05D008825 1.3e-08 62.8 39 61.5
Rhsim04G0141800 Rhododendron simsii HOM05D006897 ORTHO05D008825 1.3e-08 62.8 39 66.7
BcaB02g09328 Brassica carinata HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
BcaC02g11805 Brassica carinata HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
A05p09040 Brassica napus HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
C04p11190 Brassica napus HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
BolC4t22765H Brassica oleracea HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
BraA05t19865Z Brassica rapa HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
Cc06_g04460 Coffea canephora HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 71.8
Medtr7g102930 Medicago truncatula HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 64.1
Sp4g19090 Schrenkiella parvula HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 61.5
HPP92_010241 Vanilla planifolia HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 64.1
HPP92_010447 Vanilla planifolia HOM05D006897 ORTHO05D008825 1.7e-08 62.4 39 64.1
Dinv35807 Davidia involucrata HOM05D006897 ORTHO05D008825 2.2e-08 62.0 37 73.0
Gorai.009G413700 Gossypium raimondii HOM05D006897 ORTHO05D008825 2.2e-08 62.0 39 69.2
Lalb_Chr01g0018621 Lupinus albus HOM05D006897 ORTHO05D008825 2.2e-08 62.0 39 71.8
MBI04_g13674_MAGBIO Magnolia biondii HOM05D000468 ORTHO05D000548 2.2e-08 62.0 39 69.2
QL07p042737 Quercus lobata HOM05D006897 ORTHO05D008825 2.2e-08 62.0 39 71.8
CsaV3_3G036130 Cucumis sativus L. HOM05D006897 ORTHO05D008825 2.9e-08 61.6 39 64.1
ECA233G4308 Erigeron canadensis HOM05D000468 ORTHO05D000548 2.9e-08 61.6 39 64.1
Aa31LG5G22050 Aethionema arabicum HOM05D006897 ORTHO05D008825 3.7e-08 61.2 39 59.0
Os01g0776700 Oryza sativa ssp. japonica HOM05D006897 ORTHO05D008825 3.7e-08 61.2 39 69.2
AL4G33030 Arabidopsis lyrata HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 59.0
AT2G36835 Arabidopsis thaliana HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 59.0
EL10Ac7g16667 Beta vulgaris HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 64.1
Carub.0004s1868 Capsella rubella HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 59.0
MELO3C009375.2 Cucumis melo HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 64.1
Migut.J00586 Erythranthe guttata HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 66.7
Eucgr.A01649 Eucalyptus grandis HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 66.7
Zm00001eb369960 Zea mays HOM05D006897 ORTHO05D008825 4.9e-08 60.8 39 69.2
Sed0016332 Sechium edule HOM05D006897 ORTHO05D008825 6.4e-08 60.5 39 61.5
Actinidia32484 Actinidia chinensis HOM05D006897 ORTHO05D008825 8.3e-08 60.1 39 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4541 Anthoceros agrestis HOM05D006897 ORTHO05D008825 8.3e-08 60.1 39 64.1
CARHR131290 Cardamine hirsuta HOM05D006897 ORTHO05D008825 8.3e-08 60.1 39 56.4
Duzib106G0008 Durio zibethinus HOM05D006897 ORTHO05D008825 8.3e-08 60.1 37 73.0
HanXRQChr13g0388291 Helianthus annuus HOM05D006897 ORTHO05D008825 8.3e-08 60.1 39 64.1
unitig_27.g25382 Utricularia gibba HOM05D006897 ORTHO05D008825 8.3e-08 60.1 39 66.7
Nn6g35243 Nelumbo nucifera HOM05D006897 ORTHO05D008825 1.1e-07 59.7 39 69.2
AagrBONN_evm.TU.Sc2ySwM_340.262 Anthoceros agrestis HOM05D006897 ORTHO05D008825 1.4e-07 59.3 39 64.1
ClCG10G019960 Citrullus lanatus HOM05D006897 ORTHO05D008825 1.4e-07 59.3 39 61.5
Sed0006529 Sechium edule HOM05D006897 ORTHO05D008825 1.9e-07 58.9 39 64.1
SMO134G0180 Selaginella moellendorffii HOM05D006897 ORTHO05D008825 1.9e-07 58.9 39 59.0
Zm00001eb151640 Zea mays HOM05D006897 ORTHO05D008825 1.9e-07 58.9 39 66.7
MSTRG.5772 Avicennia marina HOM05D006897 ORTHO05D008825 2.4e-07 58.5 39 61.5
VMungo1383G3501 Vigna mungo HOM05D006897 ORTHO05D008825 2.4e-07 58.5 39 61.5
Dinv37330 Davidia involucrata HOM05D006897 ORTHO05D000180 3.2e-07 58.2 37 70.3
Duzib093G0551 Durio zibethinus HOM05D006897 ORTHO05D008825 3.2e-07 58.2 33 69.7
Medtr0050s0130 Medicago truncatula HOM05D006897 ORTHO05D008825 3.2e-07 58.2 39 61.5
Phvul.001G180700 Phaseolus vulgaris HOM05D006897 ORTHO05D008825 3.2e-07 58.2 39 61.5
arahy.Tifrunner.gnm1.ann1.12U4ZA Arachis hypogaea HOM05D006897 ORTHO05D008825 4.1e-07 57.8 39 61.5
SalBow3G3382 Salvia bowleyana HOM05D006897 ORTHO05D008825 4.1e-07 57.8 39 64.1
Sc02g0001520 Simmondsia chinensis HOM05D006897 ORTHO05D008825 4.1e-07 57.8 39 56.4
Hund26628 Selenicereus undatus HOM05D006897 ORTHO05D008825 5.4e-07 57.4 39 61.5
Lj1g0004142 Lotus japonicus HOM05D006897 ORTHO05D008825 7.0e-07 57.0 39 64.1
Glyma.19G185800 Glycine max HOM05D006897 ORTHO05D008825 1.6e-06 55.8 39 61.5
SGA_v2.0_scaffold40G15485 Striga asiatica HOM05D006897 ORTHO05D008825 1.6e-06 55.8 39 64.1
Glyma.03G185300 Glycine max HOM05D006897 ORTHO05D008825 2.7e-06 55.1 39 61.5
SEGI_02421 Sequoiadendron giganteum HOM05D006897 ORTHO05D008825 3.5e-06 54.7 39 53.8
Pp3c2_31470 Physcomitrium patens HOM05D006897 ORTHO05D008825 6.0e-06 53.9 39 59.0


User provided reference genes

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