Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 0.0e+00 1391.7 724 100.0
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 0.0e+00 1166.4 731 85.4
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.5e-242 843.2 736 66.0
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.2e-225 786.2 717 62.3
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.4e-147 526.9 745 43.8
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 5.9e-130 469.2 745 41.2
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 7.7e-122 442.2 760 40.7
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.3e-121 441.4 771 41.0
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.3e-118 430.6 769 41.0
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.4e-117 426.8 777 38.5
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.6e-114 417.9 775 37.7
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.1e-112 411.8 762 37.5
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.6e-106 391.3 773 36.6
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 3.5e-106 390.2 780 37.2
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 5.9e-106 389.4 774 35.5
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 5.7e-101 372.9 747 36.4
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.8e-99 367.9 774 35.4
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.2e-99 367.1 774 35.4
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.6e-98 364.8 759 35.4
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 2.3e-97 360.9 782 36.4
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.5e-96 358.2 727 37.7
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 3.1e-94 350.5 751 37.4
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 8.3e-92 342.4 785 34.4
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 8.6e-89 332.4 762 34.3
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 9.5e-88 328.9 779 34.9
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.8e-87 327.4 779 34.1
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.3e-84 318.5 798 33.8
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.4e-83 314.3 420 46.0
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 3.2e-83 313.9 759 35.3
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 3.2e-83 313.9 780 34.0
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 6.0e-82 309.7 811 32.4
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.6e-77 294.3 766 33.6
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.9e-76 290.0 765 33.7
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.0e-74 283.1 765 33.1
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.9e-72 278.1 761 33.0
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.9e-72 278.1 743 33.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.5e-72 277.7 769 33.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 2.1e-71 274.6 776 30.4
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.8e-71 274.2 755 33.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 8.1e-71 272.7 782 31.5
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.0e-70 270.4 768 31.8
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.4e-69 267.3 748 32.5
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 3.2e-67 260.8 789 31.3
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.6e-66 256.9 818 28.5
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.3e-65 255.4 738 31.2
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.3e-65 254.6 531 35.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.2e-61 242.3 747 30.3
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.3e-60 238.8 783 28.6
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 2.4e-59 234.6 776 29.4
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 4.2e-59 233.8 780 29.2
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.7e-58 231.1 764 30.0
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.8e-57 228.4 787 29.9
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.8e-57 228.4 510 35.7
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 2.3e-57 228.0 780 29.1
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 5.1e-57 226.9 789 29.9
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.1e-56 225.7 756 30.3
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.3e-56 224.2 743 30.3
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.6e-55 221.9 793 28.6
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.8e-55 221.1 748 31.0
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 5.3e-54 216.9 778 29.0
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.9e-51 208.4 473 33.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.4e-51 208.0 501 33.7
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.1e-51 206.5 416 38.0
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 3.5e-50 204.1 789 29.9
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.0e-49 201.1 724 29.8
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.4e-46 192.2 510 31.0
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-45 189.1 511 30.9
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.6e-45 188.0 814 26.4
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 3.4e-45 187.6 772 27.8
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 5.8e-45 186.8 752 28.9
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.7e-44 185.3 479 33.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 4.9e-44 183.7 514 30.5
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.3e-43 179.5 467 31.5
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.6e-42 178.7 762 28.5
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 9.6e-40 169.5 799 26.2
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.3e-39 169.1 447 32.7
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.6e-39 168.7 754 26.9
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 9.0e-38 162.9 414 34.3
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.9e-36 157.9 420 31.9
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.6e-34 152.1 756 26.3
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.3e-33 149.1 407 32.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 5.7e-32 143.7 475 29.3
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 6.3e-31 140.2 250 38.8
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 4.1e-30 137.5 457 30.2
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.5e-29 135.6 279 36.2
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.2e-28 131.7 247 40.1
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 2.9e-28 131.3 563 26.6
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 2.5e-27 128.3 492 28.0
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.5e-27 128.3 223 38.1
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 9.4e-27 126.3 343 32.1
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.2e-26 125.9 458 28.4
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.6e-26 124.4 439 30.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 3.6e-26 124.4 437 30.0
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.0e-25 122.9 240 37.9
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.8e-25 122.1 600 26.0
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 2.3e-25 121.7 382 29.8
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 5.1e-25 120.6 364 29.4
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 6.7e-25 120.2 223 39.0
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 5.7e-24 117.1 447 27.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 3.7e-23 114.4 382 29.6
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 6.3e-23 113.6 593 23.6
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 8.2e-23 113.2 284 34.9
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.4e-22 111.7 284 35.2
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-21 109.4 370 29.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.2e-21 109.4 370 29.2
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 1.5e-21 109.0 367 29.2
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-20 106.3 375 29.6
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 5.0e-20 104.0 370 28.9
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 5.0e-20 104.0 370 28.9
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.5e-20 103.6 204 35.3
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 3.6e-18 97.8 103 48.5
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 6.7e-17 93.6 270 31.1
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.3e-16 91.3 344 26.7
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 4.4e-16 90.9 226 33.2
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.1e-14 86.3 380 26.8
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.4e-14 85.9 278 29.9
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 2.4e-14 85.1 311 32.5
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 3.1e-14 84.7 384 26.0
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 3.1e-14 84.7 384 26.0
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 3.1e-14 84.7 384 26.0
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.6e-13 82.4 247 27.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.9e-12 78.2 163 31.3
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.5e-12 77.0 478 23.6
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.7e-10 70.9 200 32.5
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 8.0e-10 70.1 55 63.6
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-09 69.7 83 41.0
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.2e-08 66.2 433 25.6
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 9.7e-08 63.2 286 25.5
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 1.7e-07 62.4 244 28.7
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 1.7e-07 62.4 244 28.7


User provided reference genes

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