Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 2.0e-41 172.2 96 100.0
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.1e-34 148.3 94 89.4
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 5.6e-28 127.5 96 74.0
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 9.5e-28 126.7 96 71.9
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.4e-26 122.9 89 79.8
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 5.2e-26 120.9 94 72.3
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.0e-25 119.0 96 68.8
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 3.7e-24 114.8 94 67.0
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.1e-23 113.2 97 66.0
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.4e-23 112.8 96 70.8
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 4.1e-23 111.3 98 68.4
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 4.1e-23 111.3 98 66.3
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.2e-22 109.8 90 68.9
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 3.5e-22 108.2 98 66.3
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 6.0e-22 107.5 94 62.8
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 7.8e-22 107.1 96 63.5
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.0e-21 106.7 90 65.6
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.0e-21 106.7 94 61.7
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.3e-21 106.3 96 64.6
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.7e-21 105.9 99 66.7
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 2.3e-21 105.5 91 67.0
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.0e-21 105.1 99 63.6
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 3.0e-21 105.1 96 64.6
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 3.0e-21 105.1 91 68.1
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 8.6e-21 103.6 96 65.6
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 1.5e-20 102.8 98 61.2
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.5e-20 102.1 100 59.0
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 2.5e-20 102.1 94 62.8
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 2.5e-20 102.1 97 60.8
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.3e-20 101.3 99 61.6
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 9.5e-20 100.1 95 63.2
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.2e-19 99.8 96 62.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.2e-19 99.8 99 60.6
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.2e-19 99.8 94 62.8
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.2e-19 99.8 96 61.5
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.2e-19 99.8 97 61.9
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 6.2e-19 97.4 98 63.3
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 6.2e-19 97.4 94 60.6
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 8.1e-19 97.1 94 60.6
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.1e-19 97.1 96 64.6
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.1e-19 97.1 96 64.6
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 8.1e-19 97.1 96 59.4
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 8.1e-19 97.1 96 59.4
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.1e-18 96.7 95 64.2
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.1e-18 96.7 99 62.6
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.8e-18 95.9 97 61.9
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.8e-18 95.9 99 61.6
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 3.1e-18 95.1 96 58.3
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 4.0e-18 94.7 95 60.0
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.2e-18 94.4 92 65.2
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 5.2e-18 94.4 94 59.6
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.5e-17 92.8 97 57.7
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.6e-17 92.0 81 69.1
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 4.4e-17 91.3 90 58.9
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 5.8e-17 90.9 93 57.0
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.3e-16 89.7 98 59.2
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.3e-16 89.7 97 56.7
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.7e-16 89.4 91 57.1
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.7e-16 89.4 97 58.8
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.7e-16 89.4 99 62.6
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 2.2e-16 89.0 92 56.5
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.7e-16 88.2 96 57.3
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.7e-16 88.2 94 60.6
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.9e-16 87.8 93 58.1
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 4.9e-16 87.8 91 58.2
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 6.4e-16 87.4 100 58.0
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.1e-15 86.7 90 56.7
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.1e-15 86.7 90 56.7
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.1e-15 86.7 97 55.7
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.4e-15 85.5 97 54.6
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.2e-15 85.1 97 56.7
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.2e-15 85.1 94 53.2
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 5.4e-15 84.3 95 53.7
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 7.1e-15 84.0 90 56.7
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.2e-14 83.2 97 57.7
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 3.5e-14 81.6 93 55.9
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 4.6e-14 81.3 91 52.7
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 4.6e-14 81.3 46 91.3
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.3e-13 79.7 93 55.9
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.3e-13 79.7 93 54.8
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.3e-13 79.7 95 53.7
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 1.3e-13 79.7 92 54.3
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 3.0e-13 78.6 93 52.7
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 5.1e-13 77.8 96 49.0
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 6.6e-13 77.4 97 50.5
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 8.6e-13 77.0 85 55.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 8.6e-13 77.0 85 55.3
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 1.1e-12 76.6 93 50.5
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.5e-12 76.3 91 50.5
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 2.5e-12 75.5 80 57.5
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 3.3e-12 75.1 94 51.1
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 4.3e-12 74.7 95 50.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 5.6e-12 74.3 43 83.7
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.2e-11 73.2 95 51.6
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.6e-11 72.8 94 46.8
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.6e-11 72.8 85 50.6
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 2.8e-11 72.0 92 53.3
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.1e-10 70.1 93 46.2
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.8e-10 69.3 94 52.1
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 6.8e-10 67.4 82 52.4
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.2e-09 66.6 88 53.4
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.5e-09 66.2 90 48.9
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-09 65.1 51 68.6
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 4.4e-09 64.7 84 52.4
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 5.8e-09 64.3 80 51.2
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 5.8e-09 64.3 88 51.1
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.3e-08 63.2 84 48.8
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.2e-08 62.4 89 51.7
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 2.2e-08 62.4 47 66.0
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.9e-08 62.0 75 58.7
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.9e-08 61.2 91 50.5
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 7.1e-07 57.4 29 86.2
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 9.3e-07 57.0 90 45.6
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 2.1e-06 55.8 96 43.8
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.1e-06 55.8 71 46.5
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 2.1e-06 55.8 74 50.0
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.7e-06 55.5 90 42.2
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.7e-06 55.5 40 62.5
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.5e-06 55.1 85 41.2
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 3.5e-06 55.1 91 45.1
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.5e-06 55.1 66 48.5
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 4.6e-06 54.7 74 44.6
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 4.6e-06 54.7 74 44.6


User provided reference genes

Program Settings