Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 4.5e-62 241.1 124 100.0
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 8.2e-40 167.2 97 84.5
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 7.0e-31 137.5 104 71.2
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.8e-18 94.4 98 53.1
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.0e-17 92.8 98 53.1
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.7e-17 91.3 98 52.0
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 3.7e-16 88.6 97 51.5
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.4e-15 86.7 90 55.6
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.1e-15 85.1 101 46.5
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.2e-14 83.6 91 50.5
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.7e-14 82.4 101 45.5
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 2.7e-14 82.4 80 56.2
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 4.5e-14 81.6 94 44.7
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.9e-14 81.3 101 44.6
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 7.7e-14 80.9 83 54.2
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.0e-13 80.5 80 53.8
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.0e-13 80.5 99 45.5
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 1.0e-13 80.5 96 47.9
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 1.7e-13 79.7 88 48.9
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 5.0e-13 78.2 95 45.3
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 6.5e-13 77.8 95 47.4
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 8.5e-13 77.4 92 45.7
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 1.1e-12 77.0 82 53.7
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 1.9e-12 76.3 104 44.2
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.9e-12 76.3 79 57.0
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 3.2e-12 75.5 97 45.4
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 3.2e-12 75.5 97 43.3
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 3.2e-12 75.5 92 45.7
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 3.2e-12 75.5 92 46.7
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 3.2e-12 75.5 91 48.4
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 9.4e-12 73.9 97 43.3
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.2e-11 73.6 79 46.8
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.6e-11 73.2 77 54.5
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 2.1e-11 72.8 87 49.4
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 2.7e-11 72.4 93 43.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 3.6e-11 72.0 91 44.0
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 3.6e-11 72.0 87 48.3
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 6.1e-11 71.2 85 45.9
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 8.0e-11 70.9 100 47.0
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.0e-10 70.5 87 44.8
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.0e-10 70.5 95 38.9
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-10 69.3 88 44.3
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-10 69.3 83 47.0
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 5.2e-10 68.2 95 44.2
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 6.8e-10 67.8 81 50.6
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 6.8e-10 67.8 78 52.6
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 6.8e-10 67.8 81 50.6
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 6.8e-10 67.8 78 52.6
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 6.8e-10 67.8 78 52.6
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 6.8e-10 67.8 87 50.6
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 8.8e-10 67.4 87 47.1
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.5e-09 66.6 93 39.8
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 1.5e-09 66.6 84 45.2
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 2.0e-09 66.2 81 49.4
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 2.0e-09 66.2 81 49.4
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.0e-09 66.2 90 38.9
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 2.0e-09 66.2 83 49.4
BcaB04g17352 Brassica carinata HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 49.3
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 55.1
A08p04090 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 49.3
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 55.1
C08p04280 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 49.3
BolC8t47231H Brassica oleracea HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 49.3
BraA08t32434Z Brassica rapa HOM05D009461 ORTHO05D002252 2.6e-09 65.9 69 49.3
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.6e-09 65.9 60 50.0
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 3.4e-09 65.5 71 53.5
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 3.4e-09 65.5 71 53.5
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.4e-09 65.5 94 45.7
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 3.4e-09 65.5 78 44.9
BcaC07g37067 Brassica carinata HOM05D009461 ORTHO05D002252 4.4e-09 65.1 69 49.3
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 5.7e-09 64.7 73 50.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 5.7e-09 64.7 87 46.0
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 5.7e-09 64.7 80 50.0
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 5.7e-09 64.7 96 42.7
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 7.5e-09 64.3 97 44.3
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 7.5e-09 64.3 69 53.6
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 7.5e-09 64.3 69 53.6
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 7.5e-09 64.3 77 44.2
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 7.5e-09 64.3 68 54.4
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 9.8e-09 63.9 73 49.3
C05p34800 Brassica napus HOM05D009461 ORTHO05D002252 9.8e-09 63.9 81 48.1
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 9.8e-09 63.9 77 46.8
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 9.8e-09 63.9 87 49.4
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 9.8e-09 63.9 87 49.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.7e-08 63.2 83 44.6
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.2e-08 62.8 75 40.0
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 2.8e-08 62.4 69 52.2
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.8e-08 62.4 91 44.0
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.8e-08 62.4 89 43.8
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 3.7e-08 62.0 84 44.0
CARHR039300 Cardamine hirsuta HOM05D009461 ORTHO05D002252 3.7e-08 62.0 85 45.9
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 8.3e-08 60.8 94 37.2
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.1e-07 60.5 92 41.3
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.1e-07 60.5 92 42.4
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 1.8e-07 59.7 80 46.2
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 2.4e-07 59.3 107 35.5
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.4e-07 59.3 80 42.5
Carub.0001s3849 Capsella rubella HOM05D009461 ORTHO05D002252 3.1e-07 58.9 77 44.2
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 3.1e-07 58.9 101 40.6
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.1e-07 58.5 88 39.8
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 4.1e-07 58.5 88 40.9
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 4.1e-07 58.5 72 44.4
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 5.4e-07 58.2 81 39.5
Cpa.g.sc62.134 Carica papaya HOM05D007227 ORTHO05D002252 7.0e-07 57.8 54 53.7
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 7.0e-07 57.8 77 37.7
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.0e-07 57.8 97 39.2
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 9.2e-07 57.4 82 39.0
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 9.2e-07 57.4 82 39.0
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.2e-06 57.0 58 48.3
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.2e-06 57.0 77 36.4
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.2e-06 57.0 80 42.5
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 1.6e-06 56.6 87 39.1
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 2.0e-06 56.2 97 36.1
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 2.0e-06 56.2 77 37.7
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 2.0e-06 56.2 91 38.5
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-06 55.8 83 42.2
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-06 55.8 83 42.2
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-06 55.8 69 42.0
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.7e-06 55.8 54 53.7
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.7e-06 55.8 87 39.1
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.7e-06 55.8 89 38.2
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 2.7e-06 55.8 93 40.9
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 3.5e-06 55.5 82 40.2
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 4.5e-06 55.1 60 46.7
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.5e-06 55.1 93 37.6
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.5e-06 55.1 89 38.2
Hund06226 Selenicereus undatus HOM05D007227 ORTHO05D002252 4.5e-06 55.1 97 37.1
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 5.9e-06 54.7 83 36.1
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.7e-06 54.3 87 37.9


User provided reference genes

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