Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 1.2e-292 1009.2 534 100.0
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 6.7e-232 807.4 471 91.1
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 8.5e-219 763.8 471 85.4
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 3.5e-188 662.1 477 74.4
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 2.9e-182 642.5 478 70.1
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 1.2e-177 627.1 500 67.6
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 2.4e-176 622.9 475 69.3
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 8.9e-176 620.9 477 70.9
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 2.6e-175 619.4 479 70.6
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 2.6e-175 619.4 479 70.6
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 8.4e-174 614.4 474 68.6
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 9.2e-173 610.9 475 69.1
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 2.1e-172 609.8 481 69.0
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 6.6e-171 604.7 471 67.1
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 4.3e-170 602.1 471 66.7
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 4.7e-169 598.6 468 68.6
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 6.2e-169 598.2 480 66.0
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 4.0e-168 595.5 475 66.9
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 9.0e-168 594.3 514 63.8
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 9.0e-168 594.3 481 64.9
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.2e-167 594.0 481 67.6
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 4.4e-167 592.0 471 66.7
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.9e-165 586.6 480 65.4
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.9e-165 586.6 472 65.9
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 2.4e-165 586.3 469 66.1
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 3.2e-165 585.9 474 65.0
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 1.2e-164 583.9 465 65.8
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.6e-164 583.6 465 65.8
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 3.5e-164 582.4 473 66.0
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 7.8e-164 581.3 465 65.6
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 7.8e-164 581.3 515 62.3
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.0e-163 580.9 502 62.9
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 3.9e-163 578.9 463 65.4
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.1e-163 578.6 472 66.5
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 8.7e-163 577.8 501 62.9
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.1e-162 577.4 472 66.1
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.9e-162 576.6 491 64.4
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 2.1e-161 573.2 488 65.0
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 2.8e-161 572.8 473 63.8
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 3.1e-160 569.3 476 63.4
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 6.9e-160 568.2 471 63.9
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.5e-159 567.0 495 62.0
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 4.5e-159 565.5 473 62.6
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 7.6e-159 564.7 470 63.2
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.7e-158 563.5 473 63.4
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 2.2e-158 563.1 469 64.0
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 4.9e-158 562.0 474 63.5
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 8.4e-158 561.2 461 64.6
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 5.4e-157 558.5 479 62.8
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 5.4e-157 558.5 476 63.7
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 1.6e-156 557.0 473 61.9
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 2.1e-156 556.6 476 62.4
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.8e-155 553.5 471 61.6
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.0e-155 552.7 481 62.8
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 8.7e-155 551.2 476 63.7
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 8.7e-155 551.2 475 63.4
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.5e-154 550.4 467 61.9
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 1.9e-154 550.1 468 62.0
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 1.9e-154 550.1 471 63.5
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 2.5e-154 549.7 473 61.5
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.3e-153 547.4 475 62.5
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.6e-153 547.0 471 63.1
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 3.7e-153 545.8 472 63.6
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 6.2e-153 545.0 476 62.2
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 4.0e-152 542.3 481 61.3
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 5.3e-152 542.0 469 61.2
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 9.0e-152 541.2 466 62.7
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.2e-150 536.6 475 61.5
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 7.1e-149 531.6 471 61.8
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.2e-148 530.8 445 63.4
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.6e-148 530.4 471 60.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 7.9e-148 528.1 474 59.9
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 7.9e-148 528.1 497 60.0
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 3.9e-147 525.8 474 60.5
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 8.7e-147 524.6 477 61.2
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 5.6e-146 521.9 476 61.3
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 1.5e-143 513.8 427 64.4
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 5.8e-143 511.9 488 56.6
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 2.2e-142 510.0 469 57.4
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 7.1e-141 505.0 476 57.4
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.6e-140 503.8 431 65.0
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 1.3e-137 494.2 424 63.0
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 4.8e-137 492.3 424 63.4
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 8.2e-137 491.5 489 55.4
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 8.2e-137 491.5 494 53.8
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 3.0e-131 473.0 382 65.4
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.1e-130 471.1 492 54.3
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 2.8e-129 466.5 331 74.6
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 9.1e-128 461.5 482 53.3
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 2.6e-127 459.9 470 52.8
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 3.2e-125 453.0 388 63.1
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.2e-124 451.1 364 67.0
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.7e-121 440.7 484 50.8
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.7e-121 440.7 481 52.0
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.1e-120 438.0 481 51.4
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 3.8e-118 429.5 332 67.5
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 5.2e-115 419.1 325 67.7
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 6.7e-115 418.7 471 51.6
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.7e-108 396.7 521 48.9
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 1.0e-107 394.8 365 58.4
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.0e-102 378.3 357 58.0
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.8e-102 376.3 324 63.9
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 1.9e-101 374.0 332 62.0
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 4.9e-89 332.8 347 54.8
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.1e-88 331.6 305 62.6
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 2.3e-86 323.9 275 63.3
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 3.9e-78 296.6 229 66.4
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 8.6e-78 295.4 495 36.6
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 8.9e-75 285.4 431 41.1
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 8.1e-60 235.7 351 43.3
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 5.1e-54 216.5 497 31.6
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 9.3e-48 195.7 494 33.2
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.1e-44 184.5 156 63.5
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.2e-39 168.7 201 50.2
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 3.3e-29 134.0 504 25.6
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.6e-28 131.7 374 33.4
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 2.2e-25 121.3 141 49.6
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 3.2e-24 117.5 82 72.0
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.2e-23 115.5 133 51.9
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-23 114.8 437 25.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-21 108.2 81 64.2
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 3.3e-21 107.5 81 65.4
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 7.4e-21 106.3 82 65.9
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.4e-19 102.1 405 25.7
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.9e-16 91.7 109 45.9
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 3.1e-11 74.3 109 41.3
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.7e-09 68.6 72 43.1
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 1.4e-08 65.5 72 41.7
SEGI_04453 Sequoiadendron giganteum HOM05D006261 ORTHO05D386652 1.0e-06 59.3 55 60.0
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 5.1e-06 57.0 81 48.1


User provided reference genes

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