Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 2131.3 1067 100.0
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1918.3 1125 88.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1859.0 1125 84.9
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1854.0 1125 84.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1770.4 1065 83.6
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1761.5 1067 83.3
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1071 83.1
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1743.8 1063 81.7
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1742.6 1063 81.7
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1741.1 1074 81.5
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1739.9 1059 83.7
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1737.6 1064 81.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1737.6 1052 82.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1736.5 1063 81.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1733.4 1068 82.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1729.9 1067 81.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1729.1 1067 82.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1726.8 1029 84.1
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1075 80.9
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1719.9 1066 80.4
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1711.8 1049 82.4
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1084 80.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1053 81.4
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1706.0 1046 81.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1045 82.2
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1017 82.6
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1699.9 1053 80.8
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1059 80.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1135 76.5
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1687.5 1063 79.9
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1057 80.3
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1046 79.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1679.8 1040 80.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1679.8 1064 80.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1679.5 1053 80.4
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1029 80.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1673.7 1070 78.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1672.5 1043 79.9
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1672.1 1040 80.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1046 79.4
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1669.1 1046 79.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1668.7 1029 80.1
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1667.1 1067 78.6
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1664.4 1055 79.1
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1664.4 1046 79.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1664.0 1078 78.0
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1662.9 1064 79.0
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1055 78.8
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1043 79.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1104 76.7
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1069 77.9
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1043 79.4
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1047 79.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1054 78.3
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1088 76.6
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1065 78.8
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1087 76.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1651.7 1066 78.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1646.7 1075 77.7
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1047 78.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1035 77.7
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1634.4 1076 75.4
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1046 77.2
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1022 79.3
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1629.4 1015 79.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1044 77.5
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1064 76.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1625.9 1046 77.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1625.9 1044 77.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1623.2 1022 78.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1622.8 1019 78.2
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1045 77.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1618.6 1044 77.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1618.2 1045 77.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1046 76.6
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1028 77.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1617.4 1066 76.8
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1616.3 1045 76.9
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1025 78.3
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1022 78.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1022 77.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1022 78.0
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1017 78.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1022 78.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1046 76.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1043 76.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1017 77.8
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1043 76.6
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1043 76.3
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1605.5 1022 77.8
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1060 76.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1043 75.9
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1043 75.9
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1086 74.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1025 77.9
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1044 76.0
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1072 74.5
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1058 76.3
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 1044 76.1
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1579.3 1141 71.5
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 1050 76.0
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1052 75.9
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1045 75.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1573.9 1171 69.7
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1537.3 1067 73.1
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1521.5 984 77.0
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1498.8 1100 70.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1490.7 951 78.7
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1489.6 990 77.0
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 906 80.8
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1431.8 978 73.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1430.6 1039 68.2
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1393.3 1019 66.6
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1357.8 801 83.6
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1354.3 1091 67.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1353.2 1091 67.3
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1346.3 994 66.7
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1267.7 1067 61.2
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1225.7 1070 60.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1197.6 748 80.3
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1174.5 807 72.4
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1149.0 722 78.5
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1147.1 737 79.5
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 1024 53.6
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1093.6 1043 53.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.3e-312 1074.3 1025 53.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.7e-306 1056.2 739 71.9
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-288 996.5 917 58.7
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.5e-267 926.8 841 59.6
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.5e-267 924.5 596 78.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 8.3e-266 921.0 777 59.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.2e-260 901.7 617 72.9
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.1e-231 805.4 1004 42.8
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.7e-214 748.0 671 57.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.8e-213 746.5 704 57.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.0e-206 723.8 705 55.6
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.2e-189 667.2 428 77.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.5e-177 625.2 532 63.5
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.4e-172 611.3 464 70.3
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.8e-172 610.9 415 74.7
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.3e-169 600.1 409 73.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.7e-163 580.5 347 86.2
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.7e-160 569.7 1062 37.0
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.9e-156 557.8 393 68.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.8e-155 552.4 463 65.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 8.1e-136 489.2 397 63.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.3e-132 475.7 327 70.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.0e-130 472.2 309 74.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 4.2e-124 450.3 335 68.1
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.1e-103 380.6 1028 28.8
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.4e-102 377.5 227 82.4
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.5e-100 371.3 217 85.3
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.1e-97 362.5 917 29.9
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 9.1e-95 352.8 1071 26.7
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-83 315.1 937 28.9
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.2e-74 283.9 191 71.7
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 5.6e-60 237.3 222 55.9
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-53 214.5 310 44.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 5.6e-52 210.7 332 35.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.4e-50 206.1 844 23.2
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 7.8e-46 190.3 144 66.7
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.7e-45 189.1 124 77.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.1e-43 182.2 216 53.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 3.1e-42 178.3 183 52.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.3e-40 172.9 127 64.6
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 6.6e-37 160.6 134 61.9
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.3e-36 157.9 149 57.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.1e-35 155.6 310 34.5
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-32 146.0 163 43.6
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.3e-28 131.7 500 25.0
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.2e-25 123.2 214 37.4
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 8.4e-24 117.1 77 71.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-23 115.5 294 26.5
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.5e-20 106.3 464 24.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.3e-20 104.8 98 58.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.4e-15 87.8 66 65.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.0e-13 83.6 58 65.5
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.3e-11 76.6 56 66.1
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 4.8e-11 74.7 45 77.8
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 6.2e-11 74.3 51 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 5.8e-09 67.8 133 39.8
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.2e-07 62.0 36 80.6


User provided reference genes

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