Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 3974.9 1986 100.0
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 3370.9 2003 87.0
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 3070.0 2012 79.5
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 3001.8 2015 77.6
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2357.8 2025 62.3
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2197.2 2063 58.8
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2157.9 2017 59.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2154.8 2031 57.8
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2147.5 2025 59.5
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2132.5 2031 58.4
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2108.2 2024 56.8
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2095.1 2024 58.3
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2077.4 2023 56.4
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2068.1 2032 56.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2066.6 1995 58.5
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2065.4 2013 56.3
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2065.0 2034 56.7
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2060.4 2013 57.8
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2058.5 2024 56.9
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2053.9 2014 57.3
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2051.6 2024 56.8
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2046.2 2053 56.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2045.8 2041 56.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2033.1 2022 56.0
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1991.9 2055 54.7
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1986.5 2040 55.9
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1978.8 2046 55.5
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1957.2 2036 55.3
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1927.5 2056 53.1
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1920.6 2048 53.8
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1845.5 2031 51.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1843.6 2052 51.3
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1823.1 2052 51.4
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1800.8 2019 50.8
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1786.2 2016 50.4
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1777.3 2056 50.2
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1776.9 2019 50.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1773.1 2017 50.7
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1770.7 2017 50.3
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1766.1 2014 50.1
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1760.3 2027 50.4
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1741.1 2054 49.9
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1740.7 2021 49.4
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1721.1 2026 49.6
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1707.2 2022 49.3
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1697.2 2041 49.5
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1692.9 2015 48.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1689.1 1741 54.8
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1688.3 2041 49.3
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1681.0 2023 49.1
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1680.6 2024 48.2
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1668.7 1739 54.4
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1655.6 2036 49.0
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1640.9 2060 47.4
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1612.4 1957 48.8
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1596.3 1992 48.6
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1595.9 2033 47.2
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1594.7 2027 46.9
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1588.2 2032 47.1
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1577.0 2040 46.1
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1575.8 2029 46.5
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1572.4 2050 45.6
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1572.0 2024 46.1
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1570.8 2039 47.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1569.7 2053 45.5
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1568.1 2045 46.0
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1565.1 2027 46.8
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1564.3 2031 46.4
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1560.4 2025 46.4
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1559.7 2071 46.5
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1557.0 2080 46.1
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1552.3 2040 46.2
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1542.3 2024 46.3
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1528.8 1940 46.6
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1520.4 2033 45.1
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1509.2 1954 46.6
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1502.3 2034 45.5
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1491.5 2035 45.3
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1491.1 2034 45.3
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1490.7 2035 45.3
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1490.7 2035 45.3
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1484.9 1805 47.5
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1482.2 2153 43.0
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1469.1 2047 45.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1465.3 2036 44.4
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1459.5 2026 44.3
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1450.3 1951 44.9
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1436.8 1467 55.3
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1431.4 1965 44.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1424.8 1467 55.1
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1410.6 2013 43.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1316.2 2027 42.0
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1291.2 1753 43.8
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1264.6 1211 56.6
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1214.5 2102 40.1
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1085.5 1715 40.3
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 1.3e-307 1060.8 2023 35.0
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 2.4e-274 950.3 2136 33.9
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.9e-257 892.5 1688 35.2
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 9.8e-236 822.0 1487 36.5
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 8.7e-208 729.2 2185 29.9
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 7.4e-183 646.4 678 56.6
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 6.3e-182 643.3 2103 29.0
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 2.5e-178 631.3 2010 29.4
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 2.9e-171 607.8 1215 35.0
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.1e-141 507.7 1738 27.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.9e-138 498.8 1890 27.2
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.2e-128 464.2 1147 31.9
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.5e-122 445.3 445 58.0
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.4e-119 434.5 443 54.0
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.2e-105 389.8 410 54.6
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 9.3e-93 347.1 345 58.8
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.7e-91 342.8 387 50.6
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.1e-90 340.1 351 56.7
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 3.2e-85 322.0 517 42.7
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 7.9e-84 317.4 264 70.1
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.5e-71 276.6 259 60.2
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 5.9e-63 248.1 262 51.5
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.4e-53 216.9 217 55.3
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.9e-53 216.5 161 65.2
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 6.1e-52 211.5 182 60.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 3.9e-51 208.8 191 61.3
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.1e-48 200.7 370 40.0
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.6e-36 160.2 314 37.9
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.9e-30 139.4 176 51.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 6.5e-30 138.3 364 33.2
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-30 137.9 1082 22.1
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 7.7e-23 114.8 68 77.9
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 8.6e-22 111.3 281 30.2
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 5.5e-21 108.6 67 77.6
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 9.5e-21 107.8 67 77.6
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 3.0e-19 102.8 226 31.4
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 5.2e-19 102.1 66 77.3
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 8.9e-19 101.3 62 75.8
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.5e-18 100.5 68 69.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 3.4e-18 99.4 68 73.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 1.4e-16 94.0 351 22.8
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-15 89.4 100 45.0
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 6.6e-14 85.1 57 80.7
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.2e-12 80.9 56 75.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 4.0e-11 75.9 87 51.7
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 3.0e-06 59.7 125 33.6


User provided reference genes

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