Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 0.0e+00 1483.8 753 100.0
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 0.0e+00 1324.7 753 91.4
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 5.4e-211 738.4 756 55.0
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 3.7e-183 646.0 759 48.7
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 3.3e-176 622.9 762 48.2
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 4.3e-176 622.5 764 48.2
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 4.8e-175 619.0 756 47.2
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 7.9e-170 601.7 761 46.6
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 2.5e-168 596.7 745 47.4
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 4.3e-168 595.9 744 47.2
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 6.5e-164 582.0 748 47.2
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 7.9e-162 575.1 766 45.7
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 1.3e-159 567.8 759 44.7
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 2.4e-158 563.5 728 47.0
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 9.1e-158 561.6 742 46.2
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 1.4e-155 554.3 703 45.4
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 2.5e-155 553.5 751 44.9
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 3.6e-154 549.7 739 43.4
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 6.1e-154 548.9 740 45.4
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 5.3e-150 535.8 749 44.2
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 2.2e-148 530.4 740 42.3
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 7.2e-147 525.4 749 43.7
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.6e-146 524.2 749 43.3
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 2.1e-146 523.9 749 43.4
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 2.7e-146 523.5 753 42.0
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 6.7e-145 518.8 746 43.3
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 2.0e-144 517.3 796 41.6
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 1.4e-142 511.1 804 41.4
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 7.7e-141 505.4 750 42.1
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 1.6e-138 497.7 746 42.2
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 2.3e-137 493.8 740 40.7
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 2.3e-137 493.8 746 42.2
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 9.1e-134 481.9 680 43.4
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 1.0e-129 468.4 761 41.0
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 1.4e-129 468.0 767 39.0
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 4.3e-123 446.4 758 39.4
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 7.3e-123 445.7 769 38.2
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 7.3e-123 445.7 654 41.0
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 1.8e-121 441.0 551 46.3
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 7.5e-120 435.6 764 38.2
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 9.8e-120 435.3 772 38.3
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 1.3e-119 434.9 764 38.4
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 1.7e-119 434.5 762 38.2
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 3.7e-119 433.3 752 38.6
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 2.0e-117 427.6 738 39.0
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 5.9e-117 426.0 749 38.5
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 1.1e-115 421.8 474 51.5
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 2.5e-115 420.6 772 37.6
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 2.0e-112 411.0 620 42.3
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 2.9e-111 407.1 809 36.3
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 3.0e-108 397.1 483 49.7
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 3.3e-107 393.7 749 35.9
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 7.3e-107 392.5 768 37.6
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 7.3e-107 392.5 768 37.8
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 2.0e-104 384.4 769 36.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 9.8e-104 382.1 738 35.5
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 3.7e-103 380.2 644 39.6
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 8.3e-103 379.0 700 37.4
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 1.9e-102 377.9 699 37.2
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 2.7e-101 374.0 774 37.2
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 2.3e-100 370.9 689 37.2
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 5.6e-99 366.3 733 36.4
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 4.7e-98 363.2 778 35.9
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 6.2e-98 362.8 778 35.7
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 3.1e-97 360.5 698 36.8
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 5.2e-97 359.8 701 37.1
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 4.9e-95 353.2 656 36.7
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 4.1e-94 350.1 778 34.7
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 4.1e-94 350.1 765 34.9
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 4.1e-94 350.1 694 36.2
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 2.3e-92 344.4 745 33.6
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 2.3e-92 344.4 742 34.2
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 8.6e-92 342.4 788 34.3
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 4.3e-91 340.1 688 37.2
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 2.1e-90 337.8 779 33.1
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 6.2e-90 336.3 751 35.2
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.3e-87 328.6 590 36.9
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 7.1e-86 322.8 663 35.1
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 4.6e-85 320.1 747 32.0
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 1.1e-83 315.5 779 32.6
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 3.6e-82 310.5 772 32.6
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 6.9e-81 306.2 716 34.2
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 1.5e-75 288.5 718 32.6
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 2.5e-75 287.7 736 32.6
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 2.6e-72 277.7 741 30.4
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 9.9e-72 275.8 520 36.0
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 8.4e-71 272.7 694 30.3
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 1.2e-69 268.9 364 46.2
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 3.9e-68 263.8 738 31.2
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 6.7e-68 263.1 616 35.1
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 5.3e-65 253.4 726 31.1
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 3.2e-62 244.2 745 31.4
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 2.5e-59 234.6 535 32.9
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 3.7e-58 230.7 534 32.6
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 8.2e-58 229.6 583 31.0
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 6.9e-57 226.5 535 32.5
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 5.0e-55 220.3 730 29.2
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 7.2e-54 216.5 767 26.5
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 1.2e-40 172.6 417 32.9
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 2.7e-37 161.4 248 41.9
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 3.7e-34 151.0 278 38.5
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 1.9e-30 138.7 150 52.0
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 5.5e-30 137.1 649 23.0
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 5.2e-28 130.6 734 24.4
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 4.2e-22 110.9 128 45.3
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 3.4e-19 101.3 568 25.4
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 4.4e-19 100.9 563 23.8
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 4.8e-18 97.4 149 43.0
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 9.1e-17 93.2 129 40.3
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 2.0e-16 92.0 95 45.3
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 1.3e-10 72.8 103 40.8
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 3.7e-10 71.2 172 32.6
Prupe.8G015600 Prunus persica HOM05D025481 ORTHO05D007911 1.2e-08 66.2 250 28.4
SEGI_13134 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 4.5e-08 64.3 268 26.5
RcHm_v2.0_Chr5g0040361 Rosa chinensis HOM05D006728 ORTHO05D007911 1.9e-06 58.9 100 38.0


User provided reference genes

Program Settings