Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.9e-154 548.5 279 100.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.1e-97 360.5 262 73.7
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.5e-94 350.1 326 61.0
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.2e-76 288.9 261 61.7
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 8.8e-74 281.2 257 59.9
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 8.2e-72 274.6 268 56.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.4e-71 273.9 257 58.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 9.1e-71 271.2 249 59.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.5e-70 270.4 239 64.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.5e-70 270.4 234 62.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.6e-70 269.6 257 58.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.0e-69 267.7 235 61.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.9e-69 266.2 261 58.2
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.8e-69 265.8 244 59.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.0e-69 265.4 261 56.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 8.5e-69 264.6 237 59.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.4e-68 263.8 246 59.8
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.5e-68 263.1 237 61.2
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.2e-68 262.3 257 56.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 5.5e-68 261.9 252 55.2
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.6e-67 260.4 239 58.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 7.9e-67 258.1 232 60.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.0e-66 257.7 242 57.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 8.8e-66 254.6 180 73.9
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.5e-65 253.8 243 58.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.7e-65 251.9 210 65.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 9.7e-65 251.1 247 57.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 9.7e-65 251.1 247 57.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-64 250.8 230 57.8
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.7e-64 250.4 247 57.1
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.8e-63 246.9 242 58.3
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.4e-63 246.5 290 49.3
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 7.0e-63 245.0 251 53.4
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 7.0e-63 245.0 247 56.7
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 3.5e-62 242.7 198 65.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.9e-62 241.9 224 58.9
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 7.7e-62 241.5 170 72.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.0e-61 241.1 246 53.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.0e-61 241.1 240 55.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.7e-61 240.4 234 54.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 5.0e-61 238.8 170 70.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.0e-61 238.8 242 52.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 6.5e-61 238.4 256 51.6
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 6.5e-61 238.4 240 54.2
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.1e-60 237.7 242 53.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-60 237.7 240 54.6
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.5e-60 237.3 246 52.8
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.5e-60 237.3 250 54.8
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.9e-60 236.9 227 58.1
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.9e-60 236.9 236 55.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.5e-60 236.5 231 54.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.2e-60 235.7 224 58.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 5.5e-60 235.3 226 57.5
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 7.2e-60 235.0 235 54.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.4e-60 234.6 253 52.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-59 234.2 227 56.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.1e-59 233.4 205 60.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.1e-59 233.4 235 53.2
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-59 233.4 178 68.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.7e-59 233.0 171 69.0
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.7e-59 233.0 216 57.4
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.7e-59 233.0 173 69.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.7e-59 232.3 246 54.1
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 4.7e-59 232.3 223 57.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 6.1e-59 231.9 170 70.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 6.1e-59 231.9 239 53.6
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.1e-59 231.9 181 64.6
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 6.1e-59 231.9 210 60.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 8.0e-59 231.5 253 52.2
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.0e-58 231.1 243 53.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.3e-58 229.9 236 55.1
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.0e-58 229.6 174 67.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.0e-58 229.6 172 68.0
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.0e-58 229.6 235 52.8
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.0e-58 229.2 188 63.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 5.2e-58 228.8 169 69.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 5.2e-58 228.8 261 51.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 6.7e-58 228.4 235 52.3
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-57 227.6 260 48.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.2e-57 227.6 253 52.2
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.2e-57 227.6 239 51.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.5e-57 227.3 176 66.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.6e-57 226.5 206 58.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.6e-57 226.5 246 50.4
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.6e-57 226.5 173 66.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.6e-57 226.5 214 58.4
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.3e-57 226.1 210 57.1
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.3e-57 226.1 210 57.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 3.3e-57 226.1 246 50.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.4e-57 225.7 244 49.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.7e-57 225.3 173 65.9
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.7e-57 225.3 173 65.9
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.7e-57 225.3 173 65.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 9.7e-57 224.6 205 57.1
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.7e-56 223.8 173 65.3
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.7e-56 223.8 181 65.2
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 3.7e-56 222.6 208 58.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 6.3e-56 221.9 171 65.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 8.2e-56 221.5 260 48.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.4e-55 220.7 260 47.7
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.4e-55 220.7 260 47.7
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.4e-55 220.7 211 58.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.4e-55 220.7 174 62.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.8e-55 220.3 236 51.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.1e-55 219.2 219 55.3
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-54 217.2 234 52.1
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.6e-54 217.2 236 49.6
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.7e-54 216.5 174 62.1
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.0e-53 214.5 169 63.3
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 2.2e-53 213.4 258 47.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.2e-53 213.4 177 62.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 3.8e-53 212.6 174 62.1
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.9e-52 210.3 217 52.5
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.3e-50 203.4 226 50.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.0e-50 202.6 201 54.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.0e-49 200.3 119 77.3
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.4e-49 199.1 180 56.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 9.8e-49 198.0 167 58.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.4e-47 192.2 170 59.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.0e-47 191.8 170 58.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.0e-46 190.3 171 60.2
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.0e-46 190.3 170 57.6
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 7.2e-44 181.8 158 59.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.7e-43 179.1 169 53.3
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.3e-42 176.8 213 49.8
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.2e-42 175.6 171 52.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.6e-41 173.3 180 48.9
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.6e-41 173.3 253 43.5
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.9e-40 169.1 183 54.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.4e-39 167.5 247 42.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 5.4e-39 165.6 168 49.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.7e-37 160.6 165 46.1
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.3e-37 160.2 215 43.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.8e-35 153.3 147 56.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.8e-34 150.6 226 43.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 5.2e-34 149.1 172 51.2
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 8.9e-34 148.3 214 46.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 4.9e-32 142.5 168 47.0
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.1e-28 131.3 182 44.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.1e-26 124.8 190 39.5
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-26 124.8 183 43.7
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-26 124.8 114 55.3
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-25 120.6 245 35.5
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.2e-18 95.9 105 46.7
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.3e-16 88.6 166 33.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.1e-15 88.2 170 38.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.7e-14 83.6 159 33.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.0e-13 80.1 174 29.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 6.2e-11 72.4 155 31.0
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.4e-10 70.5 147 27.9
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 5.2e-10 69.3 83 48.2
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.8e-09 65.9 168 27.4
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.3e-08 64.7 104 34.6
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.9e-07 60.8 148 30.4


User provided reference genes

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